View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_12 (Length: 218)
Name: NF5340_low_12
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 3973947 - 3973748
Alignment:
| Q |
13 |
cagagacacacaactgagcatcttcctgaatgatccttctccgatatagattatcattcgtaggcaatctatcacggagaagccgccaaacaaaaactga |
112 |
Q |
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| T |
3973947 |
cagagacacacaactgagcatcttcctgaatgatccttctccgatatagattatccttcgtaggcaatctatcacggagaagccgccaaacaaaaactga |
3973848 |
T |
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| Q |
113 |
aactttaagcggtacatttttcctccaaatgttaggcgcatcaactaaaggagcagaaggcatgggatgcaaagtcagccaacagagagtggtaagcacc |
212 |
Q |
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| T |
3973847 |
aactttaagcggtacatttttcctccaaatgttaggcgcatcaactaaaggagcaaaaggcat-ggatgcaaagtcggccaacagagagtggtaagcacc |
3973749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 9084008 - 9084206
Alignment:
| Q |
13 |
cagagacacacaactgagcatcttcctgaatgatccttctccgatatagattatcattcgtaggcaatctatcacggagaagccgccaaacaaaaactga |
112 |
Q |
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| T |
9084008 |
cagagacaca-aactgagcatcttcctgaataatccttctccgatataaattgtccttcataggcactctatcacggagaagccgccaagcaaagactga |
9084106 |
T |
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| Q |
113 |
aactttaagcggtacatttttcctccaaatgttaggcgcatcaactaaaggagcagaaggcatgggatgcaaagtcagccaacagagagtggtaagcacc |
212 |
Q |
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| T |
9084107 |
aactttaagcaggacattttacctccagatgctaggcgcagaagctgatgtagcagaaggcat-ggttgcaaactcagccaacagagaatggtaaacacc |
9084205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 25308578 - 25308661
Alignment:
| Q |
69 |
ttcgtaggcaatctatcacggagaagccgccaaacaaaaactgaaactttaagcggtacatttttcctccaaatgttaggcgca |
152 |
Q |
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| T |
25308578 |
ttcgtatgcaatctatcacggagaagccgccaagcaaacaccaaaactttaagcgggacatttttcctccagatgctaggcgca |
25308661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 10122974 - 10123099
Alignment:
| Q |
14 |
agagacacacaactgagcatcttcctgaatgatccttctccgatatagattatcattcgtaggcaatctatcacggagaagccgccaaacaaaaactgaa |
113 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||| ||| || ||| |||||||| |||||||||||| ||||||| |||||||||| |
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| T |
10122974 |
agagacacataactgagcatcttcctgaataatccttctccgatataaattgtccttcataggcaatatatcacggagaacccgccaagaaaaaactgaa |
10123073 |
T |
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| Q |
114 |
actttaagcggtacatttttcctcca |
139 |
Q |
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| T |
10123074 |
actttaagcgggacatttttcctcca |
10123099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 9017408 - 9017282
Alignment:
| Q |
13 |
cagagacacacaactgagcatcttcctgaatgatccttctccgatatagattatcattcgtaggcaatctatcacggagaagccgccaaacaaaaactga |
112 |
Q |
| |
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|||||| ||| ||||| |||||||| |||| |||||||||| |||||| ||| || |||||||||||||||||||||| |||||| | |||||| ||||| |
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| T |
9017408 |
cagagatacataactgcgcatcttcttgaaagatccttctctgatataaattgtctttcgtaggcaatctatcacggaaaagccgtccaacaaagactga |
9017309 |
T |
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| Q |
113 |
aactttaagcggtacatttttcctcca |
139 |
Q |
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|| ||||| || |||| ||||||||| |
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| T |
9017308 |
aatcttaagagggacatatttcctcca |
9017282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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