View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_2 (Length: 441)
Name: NF5340_low_2
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 120 - 425
Target Start/End: Original strand, 52182571 - 52182875
Alignment:
| Q |
120 |
ttcatctagttgaggcttttcaaagattggtagctttgaaacgttttggcacacgtcctgctcctaaaatatagggacccaactacttcactttaattaa |
219 |
Q |
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| T |
52182571 |
ttcatctagttgaggcttttcaaagattggtagctttgaaacgttttggcacacgtcctgctcctaaaatatagggacccaactacttcactttaattaa |
52182670 |
T |
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| Q |
220 |
tttcgacccaaaatcgaacacttcgctcagagattgtaactataaattcttcaatgcagtcagtggacacaccgcaacttcaactctgtttaccctctca |
319 |
Q |
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| T |
52182671 |
tttcgacccaaaatcgaacacttcgctcaaagattgtaactataaattcttcaatgcagtcagtggacacaccacaacttcaactctg-ttaccctctca |
52182769 |
T |
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| Q |
320 |
agtctcttccaaatctaacttcaaaatactatcaaacaaaagaacattcacaaaactcatggctcttaccactaactcaaacacatttccattcatcatc |
419 |
Q |
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| T |
52182770 |
agtctcttccaaatctaacttcaaagtactatcaaacaaaagaacattcacaaaactcatggctcttaccactaactcaaacacatttccattcatcatc |
52182869 |
T |
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| Q |
420 |
cttctg |
425 |
Q |
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|||||| |
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| T |
52182870 |
cttctg |
52182875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 52182417 - 52182526
Alignment:
| Q |
1 |
acagagaacgtggagtgtggcagttaaattaattaaggatttctttcgttattttannnnnnnaagaaagaaac-ttattttttactacatacacgtaca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
52182417 |
acagagaacgtggagtgtggcagttaaattaattaaggatttctttcgttattttatttttttaagaaagaaactttattttttactacatacacgtaca |
52182516 |
T |
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| Q |
100 |
ctgacaatgt |
109 |
Q |
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| T |
52182517 |
ctgacaatgt |
52182526 |
T |
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