View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_3 (Length: 433)
Name: NF5340_low_3
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 2149980 - 2149571
Alignment:
| Q |
7 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2149980 |
aatatccaaagattcaacttgcagagaatggacaattgccaaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
2149881 |
T |
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| Q |
107 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2149880 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgag |
2149781 |
T |
|
| Q |
207 |
tgatgcatgtgctttggttaacctctttgtgcatctttctacaattttatatcaatcttcattatattgttcatatacctctctcatctcattagtcatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2149780 |
tgatgcatgtgctttggttaacctctttgtgcatctttctacaattttatatcaatcttcattatattgttcatatacctctctcatctcattagtcatt |
2149681 |
T |
|
| Q |
307 |
ttcttaccttcattcgattttgttttatgttaattcaatgtatcaaattgtataaaatgagactaaacatcaaacacgaacaactctatacgaacatttt |
406 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2149680 |
ttcttaccttcattcgattttattttatgttaattcaatgtatcaaattgtataaaatgagactaaacatcaaacacgaacaactctatacgaacctttt |
2149581 |
T |
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| Q |
407 |
ttccccatag |
416 |
Q |
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|||||||||| |
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| T |
2149580 |
ttccccatag |
2149571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 2145505 - 2145147
Alignment:
| Q |
7 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
106 |
Q |
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||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
2145505 |
aatatccaaagattcaactagtagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttggtgagtacaaacccatggagacatt |
2145406 |
T |
|
| Q |
107 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2145405 |
aaggagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgag |
2145306 |
T |
|
| Q |
207 |
tgatgcatgtgctttggttaacctctttgtgcatctttctacaattttatatcaatcttcattatattgttcatatacctctctcatctcattagtcatt |
306 |
Q |
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||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |||| | |||| ||| |||||||||||||||| |
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| T |
2145305 |
tgatgcatgtgctttggtt-atctctttgtgcatctctctacaattttatatcaatcttcattataatgttaacatacttcttccatctcattagtcatt |
2145207 |
T |
|
| Q |
307 |
ttcttaccttcattcgattttgttttatgttaattcaatgtatcaaattgtataaaatga |
366 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
2145206 |
ttcttaccttcattcgattttatgttatgttaattcaatgtatcaaattgtataaaatga |
2145147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 2140971 - 2140701
Alignment:
| Q |
7 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
106 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140971 |
aatatccaaagattcaactagcagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
2140872 |
T |
|
| Q |
107 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
2140871 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgag |
2140772 |
T |
|
| Q |
207 |
tgatgcatgtgctttggttaacctctttgtgcatctttctacaattttatatcaatcttcattatattgttca |
279 |
Q |
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||||||| ||||||||||| | |||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
2140771 |
tgatgcacgtgctttggtt-atctctttgtgcctctttctacaa-tttatatcaatcttcatcataatgttca |
2140701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 42003993 - 42004054
Alignment:
| Q |
145 |
attgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
206 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||| ||| ||||||| |||||| |
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| T |
42003993 |
attgtatagatggatggctcaagacaaatgctacctgccctttgtgtcgaaattttccagag |
42004054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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