View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_5 (Length: 313)
Name: NF5340_low_5
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 52182129 - 52182434
Alignment:
| Q |
12 |
atgaataagtaaaaatatatttgaaattttgaataaagcataaaatcaaaccttggagaattttcatcagagttgatggagcaagatgaatgcaagaatg |
111 |
Q |
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| T |
52182129 |
atgaataagtaaaaagatatttgaaattttgaataaagcataaaatcaaaccttggagaattttcatcagagttgatggagcaagatgaatgcaagaatg |
52182228 |
T |
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| Q |
112 |
agcatgcaaaagatggaat----atatcacgggttaaaattgcaagaacgtggttcaagtaaagttcctgaaaaattaaacgccccctcaatgcttagtg |
207 |
Q |
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| T |
52182229 |
agcatgcaaaggatggaattaatatatcacgggttaaaattgcaagaacgtgggtcaagtaaagttcctgaaaaattaaacgccccctcaatgcttagtg |
52182328 |
T |
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| Q |
208 |
cactagagcctttaattacgtgctctactaccactaatctttctcaattctatttctatcttgtatattttcttttcggttatgcagcacagagaacgtg |
307 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52182329 |
cactagtgcctttaattacgtgctctactaccactaatctttctcaattatatttctatcttgtatattttcttttcggttgcgcagcacagagaacgtg |
52182428 |
T |
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| Q |
308 |
gagtgt |
313 |
Q |
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|||||| |
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| T |
52182429 |
gagtgt |
52182434 |
T |
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