View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_6 (Length: 282)
Name: NF5340_low_6
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 1330162 - 1330395
Alignment:
| Q |
35 |
ccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
134 |
Q |
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| T |
1330162 |
ccagcagtaggagctgaaagcacccaccgacccacaaaaatctcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
1330261 |
T |
|
| Q |
135 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccacctccaagacct |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1330262 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccaactccaagacct |
1330361 |
T |
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| Q |
235 |
tcacttcctccaccaattcatccaccctccttac |
268 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1330362 |
tcacttcctccaccaattcatccaccctccttac |
1330395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 29083229 - 29083197
Alignment:
| Q |
151 |
aaggcatccttttgggttccaacaccattcata |
183 |
Q |
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| T |
29083229 |
aaggcattcttttgggttccaacaccattcata |
29083197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 14247373 - 14247612
Alignment:
| Q |
35 |
ccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcga-gaaaa |
133 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
14247373 |
ccagcagtaggagctgacagcacccacggacccacataaaactcctccatgacacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaa |
14247472 |
T |
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| Q |
134 |
aactccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccacctccaag--- |
230 |
Q |
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| T |
14247473 |
acctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaaacacgttggcactttagttctatccaacacccacctccaagaca |
14247572 |
T |
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| Q |
231 |
--accttcacttcctccaccaattcatccaccctccttac |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14247573 |
gtaccttcacttcctccaccaattcatccaccctccttac |
14247612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 9850274 - 9850424
Alignment:
| Q |
36 |
cagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcga-gaaaaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||||||||||| || | |||||| |||||| ||||||| ||| ||||||||| |||||| |
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| T |
9850274 |
cagcagtaggagctgacagcacccaccaacccacagaaaactcctccacggcatgtaacagcaatagcgctatcaatattcactgaaactcgaggaaaaa |
9850373 |
T |
|
| Q |
135 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcataga |
185 |
Q |
| |
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|||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
9850374 |
actccacttatcgcataaggcattcttttgggttccaacaccattcataga |
9850424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 7701528 - 7701561
Alignment:
| Q |
159 |
cttttgggttccaacaccattcatagaataaaca |
192 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
7701528 |
cttttgggttccaacatcattcatagaataaaca |
7701561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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