View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_9 (Length: 251)
Name: NF5340_low_9
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 43468721 - 43468929
Alignment:
| Q |
12 |
catagggctcttagttattttaaaatcttatagtaaagtaagccttatggtggtaaattaagccatcaaaaaagttttataagataggataaaagaaaaa |
111 |
Q |
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| T |
43468721 |
catagggctcttagttattttaaaatcttatagtaaagtaagccttatggt---aaattaagccgtcaaaaaagttttataagataggataaaagaaaaa |
43468817 |
T |
|
| Q |
112 |
ggatccgtatcaagcaaataaacattatcaagtgttatactattaaaaaatcaagacccatttaaaataatgtttagtcttgtaagattgactcatttcg |
211 |
Q |
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| T |
43468818 |
gggtccgtatcaagcaaataaacattatcaagtgttatacaattaaaaaatcaagacccatttaaaataatgtttagtcttgtaagattgactcatttcg |
43468917 |
T |
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| Q |
212 |
ataaccaccatt |
223 |
Q |
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|||||||||||| |
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| T |
43468918 |
ataaccaccatt |
43468929 |
T |
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