View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5341-Insertion-1 (Length: 527)
Name: NF5341-Insertion-1
Description: NF5341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5341-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 220 - 518
Target Start/End: Original strand, 44462068 - 44462349
Alignment:
| Q |
220 |
atgtgagaagaatgcaaaacaaaacaaaccggaaaacttgtcctatgttcatactccagacattaacatccctgaactaattatgattcatttaagagat |
319 |
Q |
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| T |
44462068 |
atgtgagaagaatgcaaaacaaaacaaaccggaaaacttgtcctatgttcgtactccagacattaacatccctgaactaattatgattcatttaagagat |
44462167 |
T |
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| Q |
320 |
tgtcatttttc-aacaaatgtttgttaagatacgtataccccaatataaagatttcactcaaaaaggatttgctttgatatatagttttgttatggcata |
418 |
Q |
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| T |
44462168 |
tgtcatttttctaacatatgtttgttaagatacg--taccccaatataaagatttcactcaaaaaggatttgctttgatatatagttttgttatggcata |
44462265 |
T |
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| Q |
419 |
gcgaatccttcattcaaattttgaaagttttgcttcacacaaataattacttttcaccgactttatcaatatgcgatcatctttttcccccttgagtccc |
518 |
Q |
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| T |
44462266 |
gcgaatccttcattcaaattttgaaagttttggttcacacaaa----------------actttatcaatatgcgatcatctttttcccccttgagtccc |
44462349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 44461859 - 44462029
Alignment:
| Q |
8 |
gttcttattaccagggccttgcctaaacgtacttcttctgtccaaccagtcaaagtgtaatttaaatcatctttgctctgtgctatatattattgatcaa |
107 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44461859 |
gttcttattaccagggccttgcctaaacgtactccttctgcccaaccagtcaaagtgtaatttaaatcatctttgctctgtgctata--ttattgatcaa |
44461956 |
T |
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| Q |
108 |
gctcatatccttgttaaattttatgtgaatcttatatatatgattctatattattattaaagagtgttgttaa |
180 |
Q |
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| T |
44461957 |
gctcatatccttgttaaattttatgtgaatcttatatatatgattctatattattattaaagagtgttgttaa |
44462029 |
T |
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