View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5341_high_1 (Length: 367)
Name: NF5341_high_1
Description: NF5341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5341_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 165 - 350
Target Start/End: Complemental strand, 6813754 - 6813575
Alignment:
| Q |
165 |
ggtaggtactcataaacaaggaatataactaattaagctcttcaatcactctctnnnnnnnnnnnnnnnntgttctaaccattgcaaagcttggttagct |
264 |
Q |
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| T |
6813754 |
ggtaggtactcataaacaaggaatataactaattaagctcttcaatcactctc------acacacacacatgttctaaccattgcaaagcttggttagct |
6813661 |
T |
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| Q |
265 |
agctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaagttatagagtcatatg |
350 |
Q |
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| T |
6813660 |
agctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaagttatagagtcatatg |
6813575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 6813916 - 6813784
Alignment:
| Q |
4 |
atttaatggtcaaatttttagattacttaatttagtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaa |
103 |
Q |
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| T |
6813916 |
atttaatggtcaaatttttagattactta-----gtgaatttaatccttacatacccttcttacttcctccaagcttacatcaaagcataaatttgtgaa |
6813822 |
T |
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| Q |
104 |
tatggaaacaatagaatagtattcatagtgactactag |
141 |
Q |
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| T |
6813821 |
tatggaaacaatagaatagtattcatagtgactactag |
6813784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 235 - 350
Target Start/End: Complemental strand, 6834722 - 6834607
Alignment:
| Q |
235 |
tgttctaaccattgcaaagcttggttagctagctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaa |
334 |
Q |
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| T |
6834722 |
tgttctaaccattctaaagcttggttagctagctcttaaaatggctgaagttgagtttgaaagtttgtttaatcatgccatgagagggcaatggagagaa |
6834623 |
T |
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| Q |
335 |
gttatagagtcatatg |
350 |
Q |
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| T |
6834622 |
gttttagagtcatatg |
6834607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 6820224 - 6820131
Alignment:
| Q |
257 |
ggttagctagctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaagttatagagtcatatg |
350 |
Q |
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| T |
6820224 |
ggttggctagctcttaaaatggctgaaattgagtttgaaagtttgtttaatcatgcaatgagagggcaatggagagaagttttagagtcatatg |
6820131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 6820423 - 6820330
Alignment:
| Q |
44 |
ttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaatagtattcatagtgacta |
137 |
Q |
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| T |
6820423 |
ttaatccttacacattctttttacttccgacaagcttacttcaacacattcttttgtgaatatggaaacaataaaataatatgcaaagtgacta |
6820330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 6834889 - 6834807
Alignment:
| Q |
37 |
agtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaata |
121 |
Q |
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| T |
6834889 |
agtgaatttaatccttacatattctttttacttcctccaagtttacttcaacatatacttttgtga--atggaaacaataaaata |
6834807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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