View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5341_low_1 (Length: 375)
Name: NF5341_low_1
Description: NF5341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5341_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 39227770 - 39227421
Alignment:
| Q |
16 |
attttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagctaggaaaactttacaaactagacac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227770 |
attttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagctaggaaaactttacaaactagacac |
39227671 |
T |
|
| Q |
116 |
acttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctcttgatatgtcaaacaatgagttaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227670 |
acttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctcttgatatgtcaaacaatgagttaaat |
39227571 |
T |
|
| Q |
216 |
ggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactctatggtgaaattccatcnnnnnnnnctgagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39227570 |
ggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactctatggtgaaattccatcttttttttctgagt |
39227471 |
T |
|
| Q |
316 |
taccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227470 |
taccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
39227421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 25546969 - 25546622
Alignment:
| Q |
16 |
attttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagctaggaaaactttacaaactagacac |
115 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25546969 |
attttggtaaccttgttaatttacttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagctacgaaaactttacaaactagacac |
25546870 |
T |
|
| Q |
116 |
acttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctcttgatatgtcaaacaatgagttaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546869 |
acttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctcttgatatgtcaaacaatgagttaaat |
25546770 |
T |
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| Q |
216 |
ggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactctatggtgaaattccatcnnnnnnnnctgagt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
25546769 |
ggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactc--tggtgaaattccatcttttttttctgagt |
25546672 |
T |
|
| Q |
316 |
taccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
365 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25546671 |
taccaaatttggaagtgttaaagctttggcataacaacttcacaggttct |
25546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 16733490 - 16733618
Alignment:
| Q |
66 |
ttgaaaggttcaattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattag |
165 |
Q |
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||||||||||||||||||| |||| |||| ||||| |||| ||||| |||||||||||||||| |||||||| | ||||| ||||||||| |||||| |
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| T |
16733490 |
ttgaaaggttcaattccacttgagttaggtcaacttaacaagctagatacacttttcttgcaaaaaaatcaactcactggttttattccacctgaattag |
16733589 |
T |
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| Q |
166 |
ggaatcttagtagtttgaaatctcttgat |
194 |
Q |
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| ||| | ||||| ||||| |||||||| |
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| T |
16733590 |
gtaatttgagtagattgaatgctcttgat |
16733618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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