View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5341_low_3 (Length: 355)
Name: NF5341_low_3
Description: NF5341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5341_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 39566667 - 39566318
Alignment:
| Q |
19 |
aaagaaagtgtactttttgtggaccccatgactataaaactttccacaccagattgagaagaaaggtgggagagagagcattgaatttaataaaaagacc |
118 |
Q |
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| T |
39566667 |
aaagaaagtgtactttttgtggaccc-atggctaaaaaactttctgcaccagattgagaagaaaggtgggagagag--cattgaatttagtaaaaagaca |
39566571 |
T |
|
| Q |
119 |
aaataacccttattttagagcattgcatcacgtacctactctagtgtaattcatgaaatttcttaattacataaaagcttagacatgcgactacctttcc |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566570 |
aaataacccttattttagagcattgcatcacatacctactctagtgtaattcatgaaatttcttaattacataaaagcttagacatgcgactacctttcc |
39566471 |
T |
|
| Q |
219 |
attttttatgtaatgtttataagggcaggttcttttttccattt---------------atataattataataaaatgttatattttaaatgagaggtac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
39566470 |
attttttatgtaatgtttataagggcaggttcttttttccatttatattatatatatttatataattgtaataaaatgttatattttaaatgaggggtac |
39566371 |
T |
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| Q |
304 |
ttgtgtcattt-----aatatgtgtctttctttcctttcaccttcatctcact |
351 |
Q |
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||||||||||| ||||| ||||||||||||||||||| ||| ||||||| |
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| T |
39566370 |
ttgtgtcatttaataaaatatatgtctttctttcctttcactttcttctcact |
39566318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 51332699 - 51332943
Alignment:
| Q |
19 |
aaagaaagtgtactttttgtggaccccatgactataaaactttccacaccagattgagaagaaaggtgggagagagagcattgaatttaataaaaagacc |
118 |
Q |
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| T |
51332699 |
aaagaaaatgtactttttatggacctcataggtataaaactttccgcaccagattgagaagaaaggtgggaga--gagcattgaatttaataaaaagatc |
51332796 |
T |
|
| Q |
119 |
aaataacccttattttagagcattgcatcacgtacctactctagtgtaattcatgaaatttcttaattacataaaagcttagacatgcgactacctttcc |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51332797 |
aaataacccttattttagagcattgcatcgcgtacctactctagtgtaattcatgaaatttcttaattacataaaagcttagacatgcgacaacctttcc |
51332896 |
T |
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| Q |
219 |
attttttatgtaatgtttataagggcaggttcttttttccatttatat |
266 |
Q |
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| T |
51332897 |
attttttatgtaatgtttataagggcaggttc-tttttccatttatat |
51332943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 51332956 - 51333053
Alignment:
| Q |
259 |
atttatataattataataaaatgttatattttaaatgagaggtacttgtgtcattt-----aatatgtgtctttctttcctttcaccttcatctcact |
351 |
Q |
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|||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||| ||| ||||||| |
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| T |
51332956 |
atttatataattgtaataaaatattatattttaaatgaggggtacttatgtcatttaataaaatatgtgcctttctttcctttcactttcttctcact |
51333053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 71 - 351
Target Start/End: Original strand, 23630375 - 23630672
Alignment:
| Q |
71 |
attgagaagaaaggtgggagagagagcattgaatttaataaaaagaccaaataacccttattttagagcattgcatcacgtacctactctagtgtaattc |
170 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
23630375 |
attgagaagaaaggtgggagagag--cattgaatttaataaaaagaacaaataacccttattttagagcattgcatcacgtaccta-tctagtgtagttc |
23630471 |
T |
|
| Q |
171 |
atgaaatttcttaattacataaaagcttagacatgcgactacctttccattttttatgtaatgtttataagggcaggttcttttttcc------------ |
258 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
23630472 |
atgaaatttcttaattacataaaagtttatacatgcgactatctttctattttttatgtaatgtttataacggcaggttcttttttccatttatattata |
23630571 |
T |
|
| Q |
259 |
---atttatataattataataaaatgttatattttaaatgagaggtacttgtgtcattt-----aatatgtgtctttctttcctttcaccttcatctcac |
350 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||| |||||| |
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| T |
23630572 |
tatatttatataattgtaataaaatgttatattttaaatgaggggtacttgtgtcatttaataaaatatgtgcctttcttttctttcacattcttctcac |
23630671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 17715309 - 17714965
Alignment:
| Q |
18 |
gaaagaaagtgtactttttgtggaccccatgactataaaactttccacaccagattgagaagaaaggtgggagagagagcattgaatttaataaaaagac |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||| |
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| T |
17715309 |
gaaagaaagtgtactttttgtggacccaatggtttaaaagctttccacaccagattgaaaagaaatttgggagagaa--cattgaatttagcaaaaagac |
17715212 |
T |
|
| Q |
118 |
caaataacccttattttagagcattgcatcacg--tacctactctagtgtaattcatgaaatttcttaattacataaaagcttagacatgcgactacctt |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||| ||| ||| | ||||||||||||| |
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| T |
17715211 |
caaataacccttgttttagagcattgcatcacgtttacctactcaagtgttcttcatgaaatttcttgattacatagaagtttaaatatgcgactacctt |
17715112 |
T |
|
| Q |
216 |
tcca-ttttttatgtaatgtttataagggcag-gttcttttttccattta---tataattataataaaatgttatattttaaatgagaggtacttgtgtc |
310 |
Q |
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|||| ||||||||||||||||||||||| | | |||||||| |||||||| ||||||| |||||||||||||||||||||| ||| | |||||||||| |
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| T |
17715111 |
tccatttttttatgtaatgtttataaggacggagttcttttatccatttatattataattgtaataaaatgttatattttaaacgagggatacttgtgtc |
17715012 |
T |
|
| Q |
311 |
att------taatatgtgtctttctttcctttcaccttcatctcact |
351 |
Q |
| |
|
||| |||||||||||||||||||| |||| ||| ||||||| |
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| T |
17715011 |
attcaatagaaatatgtgtctttctttcctatcactttcttctcact |
17714965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 5606682 - 5606778
Alignment:
| Q |
259 |
atttatataattataataaaatgttatattttaaatgagaggtacttgtgtcattt----aatatgtgtctttctttcctttcaccttcatctcact |
351 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| | |||||||||||||||| |||||||||| |||||||||||||| ||| ||||||| |
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|
| T |
5606682 |
atttatataattgtaataaaatattatattttaaatgtggggtacttgtgtcatttaataaatatgtgtcattctttcctttcactttcttctcact |
5606778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 5606123 - 5606215
Alignment:
| Q |
58 |
ctttccacaccagattgagaagaaaggtgggagagagagcattgaatttaataaaaagaccaaataacccttattttagagcattgcatcacgt |
151 |
Q |
| |
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|||| ||| ||| |||| ||||||| || |||||||| |||| |||||||||||||||||||||| ||| | |||||||||||| |||||||| |
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| T |
5606123 |
cttttcaccccaaattgcgaagaaaactgagagagagaacattcaatttaataaaaagaccaaatagccc-tcttttagagcatttcatcacgt |
5606215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 24273952 - 24273894
Alignment:
| Q |
259 |
atttatataattataataaaatgttatattttaaatgagaggtacttgtgtcatttaata |
318 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||| |
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| T |
24273952 |
atttatataattgtaataaaatattatattttaaatgtg-ggtacttgtgtcatttaata |
24273894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 24388261 - 24388319
Alignment:
| Q |
259 |
atttatataattataataaaatgttatattttaaatgagaggtacttgtgtcatttaata |
318 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||| |
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|
| T |
24388261 |
atttatataattgtaataaaatattatattttaaatgtg-ggtacttgtgtcatttaata |
24388319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 24274158 - 24274098
Alignment:
| Q |
88 |
gagagagagcattgaatttaataaaaagaccaaataacccttattttagagcattgcatcac |
149 |
Q |
| |
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|||||||| |||| ||||||||||||||| |||||| ||| | |||||||||||| |||||| |
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|
| T |
24274158 |
gagagagaacattcaatttaataaaaagatcaaatagccc-tgttttagagcatttcatcac |
24274098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 24388056 - 24388116
Alignment:
| Q |
88 |
gagagagagcattgaatttaataaaaagaccaaataacccttattttagagcattgcatcac |
149 |
Q |
| |
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|||||||| |||| ||||||||||||||| |||||| ||| | |||||||||||| |||||| |
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| T |
24388056 |
gagagagaacattcaatttaataaaaagatcaaatagccc-tgttttagagcatttcatcac |
24388116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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