View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5341_low_6 (Length: 250)
Name: NF5341_low_6
Description: NF5341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5341_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29069617 - 29069375
Alignment:
| Q |
1 |
acatctttatccttttctaataaattggatatttactttttaatcattctaccgatagatatatttggtcctttatcattaaccaaaaatgtgttttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29069617 |
acatctttatccttttctaataaattggatatttactttttaatcattctactgatagatatatttggtcctttatcattaatcaaaaatgtgttttggt |
29069518 |
T |
|
| Q |
101 |
-ctttatctttttaaaaagattcatgttttagtcctcaagtcataaagcataacat----------aagtttaatacatgacaattatggtgttaacata |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |||||| |||||||||||| |
|
|
| T |
29069517 |
cctttatctttttaaaaagattcatgttttagtcctttagtcataaagcataacataagttaacggaagtttaatacgtggcaattacggtgttaacata |
29069418 |
T |
|
| Q |
190 |
aaccccatgtggtttataaatcaggtcggcctacatgacctac |
232 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29069417 |
aaccccatgtggtttataagtcaggtcggcctacatgacctac |
29069375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 39559905 - 39559952
Alignment:
| Q |
82 |
accaaaaatgtgttttggtctt-tatctttttaaaaagattcatgttt |
128 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
39559905 |
accaaaattgtgttttggtcctatatctttttaaaaagattcatgttt |
39559952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 43004989 - 43005031
Alignment:
| Q |
92 |
tgttttggtc-tttatctttttaaaaagattcatgttttagtc |
133 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43004989 |
tgttttggtcctttatctttttaaaaagattcatgttttagtc |
43005031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 37936373 - 37936425
Alignment:
| Q |
108 |
tttttaaaaagattcatgttttagtcctcaagtcataaagcataacataagtt |
160 |
Q |
| |
|
||||| |||||||||| | ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
37936373 |
ttttttaaaagattcacgatttagtcctttagtcataaatcataacataagtt |
37936425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University