View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342-Insertion-2 (Length: 653)
Name: NF5342-Insertion-2
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 28093972 - 28094376
Alignment:
| Q |
8 |
attgcatccttttgcgaatccgattctccaagttcatcccatattaccttacatttaacacacaaagatcaaatcaaagtaatacaatgttagtcctttt |
107 |
Q |
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| T |
28093972 |
attgcatccttatgagaatctgattctccgagttcatcccatattaccttacatacaacacacaaaaatcaaatcaaagcaatacaatgttagtcctttt |
28094071 |
T |
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| Q |
108 |
cctaagaatctctagaagaagcagcagcacaaaagatgttttaactattaaggaacactagatgaaacaaaagagcttcttcacaacacagacaacagag |
207 |
Q |
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| T |
28094072 |
cctaagattctctagaagaaccagcaccacaaataatgttttaactattaaggaacattagatgaaacaaaagagatt-ttcacaacatagacaacagag |
28094170 |
T |
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| Q |
208 |
ggagaacctgaagttctttaagcaacgattcacacattgtttcttgatgagaaaactgactgctgcgtttgccgaacatcgaaaaactatgctgtnnnnn |
307 |
Q |
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| T |
28094171 |
ggagaacctgaagttctttaagcaacgattcacacattgtttcttgatgagataactgactgctgcgtttgccgaacatcgaaaaatggtgctgtaaaac |
28094270 |
T |
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| Q |
308 |
nnnnnnnnnnngccaacattataacaagaaaatgtgaaacatgtgttctacttaaatacaaccaagcattgaaagtcacaattaaatctaggcttaaaag |
407 |
Q |
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| T |
28094271 |
aaaacaaaacagccaacatgataacagggaaatgtgaaacatgtgttctacttaaatacaaccagacattgaaagtcacaattaaacataggcttaaaag |
28094370 |
T |
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| Q |
408 |
actagg |
413 |
Q |
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| T |
28094371 |
actagg |
28094376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 487 - 635
Target Start/End: Original strand, 28094475 - 28094623
Alignment:
| Q |
487 |
atgcatattccccttgccctccgcaaaaataataataataatgtgaatcatagtatgggaatcacattgatattgtataaatcaatcatagttgcaccat |
586 |
Q |
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|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094475 |
atgcatattcccttcgctctccgcaaaaataataataataatgtgaatcatagtatgggaatcacattgatattgtataaatcaatcatagttgcaccat |
28094574 |
T |
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| Q |
587 |
aaataaatgtctcaagaagacacaatatatccatttctaatccatggtg |
635 |
Q |
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| T |
28094575 |
aaataaatgtctcaagaagacacaaaatatccatttctaatccatggtg |
28094623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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