View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342-Insertion-3 (Length: 571)
Name: NF5342-Insertion-3
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Complemental strand, 47175752 - 47175197
Alignment:
| Q |
8 |
cctgcatcggtgattgcacactttgagacgtctagatcattcagcaggaggcagttgtcttcaactgcaaccaaacttgcatcagtaatattctggcatc |
107 |
Q |
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| T |
47175752 |
cctgcatcggtgattgcacactttgagacgtctagatcattcagcaggaggcagttgtcttcaactgcaaccaaacttgcatcagtaatattctggcatc |
47175653 |
T |
|
| Q |
108 |
catcgagatttagtatttcgagagttccaccatgtagcctggccaactcggaaactatgttgtctgtcaagttgcagcaacctttaaggttcaccttgac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47175652 |
catcgagatttagtatttcgagagttccaccatgtagcctggccaactcggaaactatgttgtctgtcaagttgcagcaacctttaaggttcaccttgac |
47175553 |
T |
|
| Q |
208 |
aagtccagcttcacaattctccaaaagagggagaaggccagcgtctgttataccgcaaagtccagtcagatcaacatcctgaagttggggacacaatttc |
307 |
Q |
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| T |
47175552 |
aagtccagcttcacaattctccaaaagagggagaaggccagcgtctgttataccgcaaagtccagtcagatcaacatcctgaagttggggacacaatttc |
47175453 |
T |
|
| Q |
308 |
ccgatcacagccaagctagcactgccgaaaccaggacagttccgaatggttacagatcggagatacctgcaaggtgaaagcatagatacttccacatcaa |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47175452 |
ccaatcacagccaagctagcactgccgaaaccaggacagtttcgaatggttacagatcggagatacctgcaaggtgaaagcatagatacttccacatcaa |
47175353 |
T |
|
| Q |
408 |
tgtcttgaattcccaaacacttcacaagtgtaagtgatttcaacttcgttttgatgaaagaaagggcatagaaaatcccacattgggtgaatctgttaca |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47175352 |
tgtcttgaattcccaaacacttcacaagtgtaagtgatttcaacttcgttttgatgaaagaaagggcatagaaaatcccacattgggtgaatctgttaca |
47175253 |
T |
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| Q |
508 |
ctcttccaactgcaaggtcccgagaaatattgcagatttggcaaaagctaccaatc |
563 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47175252 |
ctcttccaactgcaaggtcccgagaaatattgcagatttggcaaatgctaccaatc |
47175197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Complemental strand, 47164404 - 47163889
Alignment:
| Q |
8 |
cctgcatcggtgattgcacactttgagacgtctagatcattcagcaggaggcagttgtcttcaactgcaaccaaacttgcatcagtaatattctggcatc |
107 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47164404 |
cctgcatcagtgattgcacactttgagacatctagatcattcaacaggaggcagtcgtctgcaactgcaaccaaacttgcatcagtaatattctggcatc |
47164305 |
T |
|
| Q |
108 |
catcgagatttagtatttcgagagttccaccatgtagcctggccaactcggaaactatgttgtctgtcaagttgcagcaacctttaaggttcaccttgac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| |||||||||||| ||| |
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| T |
47164304 |
catcgagatttagtatttcgagagttccaccatgtagcctggccaccttggaaactatgtaatctgtcaagttccagcaacctgtaaggttcacctcgac |
47164205 |
T |
|
| Q |
208 |
aagtccagcttcacaattctccaaaagagggagaaggccagcgtctgttataccgcaaagtccagtcagatcaacatcctgaagttggggacacaatttc |
307 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47164204 |
aagtccagcctcacaattctccagaagagggagaaggccagcgtcagttatgccgcaaagtccagtcagatcaacatgctgaagttggggacacaatttc |
47164105 |
T |
|
| Q |
308 |
ccgatcacagccaagctagcactgccgaaaccaggacagttccgaatggttacagatcggagatacctgcaaggtgaaagcatagatacttccacatcaa |
407 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||| ||||| ||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
47164104 |
ccgaccacagccatgctagcactgccgaaaccagggcagttttgaatggttaaagatcgaagagacttgcaaggtgaaagcatagatacttccacatcaa |
47164005 |
T |
|
| Q |
408 |
tgtcttgaattcccaaacacttcacaagtgtaagtgatttcaacttcgttttgatgaaagaaagggcatagaaaatcccacattgggtgaatctgttaca |
507 |
Q |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47164004 |
tgtctttaattcccatacacttcacaagtgtaaatgatttcaacttcgttttgatgtttgaaagggcatagaaaatcccacattgggtgaatctgttaca |
47163905 |
T |
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| Q |
508 |
ctcttccaactgcaag |
523 |
Q |
| |
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|||||||||||||||| |
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| T |
47163904 |
ctcttccaactgcaag |
47163889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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