View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342-Insertion-4 (Length: 385)
Name: NF5342-Insertion-4
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 34046304 - 34045927
Alignment:
| Q |
8 |
tgctggtgatggtggagaaaggtcatcagaggcgggagagaaggcatggaattttaggacaaggaaaggtttgctggggagagaggaaagaggttgttgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34046304 |
tgctggtgatggtggagaaaggtcatcagaggcgggagagaaggcatggaattttaggacaaggaaaggtttgctggggagagaggaaagaggttgttgg |
34046205 |
T |
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| Q |
108 |
aatgaaacctttctctttcctatctagaatgatgttcatcaatcttcaacaatctctttccactctttccagcatatctttccttgttctgaaattccac |
207 |
Q |
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| T |
34046204 |
aatgaaacctttctctttcctatctagaatgatgttcatcaatcttcaacaatctctttccactctttccagcatatctttccttgttctgaaattccac |
34046105 |
T |
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| Q |
208 |
accttctctctaactgccggtgacccttctcccccatcgccactaccatcattctctttttccttcaaaatcgcatattttatcttttcatcttcaaact |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34046104 |
accttctctctaactgccggtgacccttctcccccatcgccactaccatcaatctctttttccttcaaaatcgcatattttatcttttcatcttcaaact |
34046005 |
T |
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| Q |
308 |
tcatatcaaccaacaacctttcacgcataacatcgatttcatcatgaccacctccgattctcatttttctcatcttat |
385 |
Q |
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| T |
34046004 |
tcatatcaaccaacaacctttcacgcataacatcgatttcatcatgaccacctccgattctcatttttctcatcttat |
34045927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 385
Target Start/End: Original strand, 34046206 - 34046437
Alignment:
| Q |
154 |
caacaatctctttccactctttccagcatatctttccttgttctgaaattccacaccttctctctaactgccggtgacccttctcccccatcgccactac |
253 |
Q |
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|||||| |||||||| |||| |||||| | |||||||||| || |||||||| ||||||||| | | | ||||| |||||| ||||| ||| || |
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| T |
34046206 |
caacaacctctttcctctctccccagcaaacctttccttgtcctaaaattccatgccttctctcccgcctctgatgacctttctccaccatcaccagcac |
34046305 |
T |
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| Q |
254 |
catcattctctttttccttcaaaatcgcatattttatcttttcatcttcaaacttcatatcaaccaacaacctttcacgcataacatcgatttcatcatg |
353 |
Q |
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|| ||||| ||| ||||||| ||| |||| ||||||||||||| |||||| ||||| ||||| || ||||||||||| || | ||| ||| ||||||| |
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| T |
34046306 |
caccattcacttgctccttcataatggcatcttttatcttttcagcttcaaccttcagatcaagcagcaacctttcacacacatcattgatctcatcatc |
34046405 |
T |
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| Q |
354 |
accacctccgattctcatttttctcatcttat |
385 |
Q |
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| T |
34046406 |
accaccatcgattatcaatctgctcatcttat |
34046437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 49807517 - 49807428
Alignment:
| Q |
270 |
cttcaaaatcgcatattttatcttttcatcttcaaacttcatatcaaccaacaacctttcacgcataacatcgatttcatcatgaccacc |
359 |
Q |
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|||||||||||||| ||| ||| | || |||||| ||||| ||||| || |||||||||||||||| ||||||| |||||| |||||| |
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| T |
49807517 |
cttcaaaatcgcatctttcatcctaccagcttcaaccttcagatcaaacatcaacctttcacgcatagcatcgatcccatcatcaccacc |
49807428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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