View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342-Insertion-5 (Length: 380)
Name: NF5342-Insertion-5
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 148 - 380
Target Start/End: Original strand, 42471130 - 42471355
Alignment:
| Q |
148 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatcc |
247 |
Q |
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| T |
42471130 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctt-------gtatgcttcattgatcttgtgagaggaaaaagctgcatcc |
42471222 |
T |
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| Q |
248 |
aatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattggttccataatctatacgagcat |
347 |
Q |
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| T |
42471223 |
aatccattttcaaagacagtgccatggaaacaagtaaacccatcgctgatgttctcgatactttgaacgagactattggttccataatctatacgagcat |
42471322 |
T |
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| Q |
348 |
acttgtctcctttgaataagtaagcttctttgt |
380 |
Q |
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| T |
42471323 |
acttgtctcctttgaataagtaagcttctttgt |
42471355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 42468292 - 42468438
Alignment:
| Q |
8 |
ttattacatcaatttttattctt-aagtatcacagtactggcagcattatgacgattagacagtcataccagtcacggttaattctgttcaggtattatt |
106 |
Q |
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| T |
42468292 |
ttattacatcaatttttattctttaagtatcacagtactggcagcattatgacgattacacagtcataccagtcacggttaattctgttcaggtattatt |
42468391 |
T |
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| Q |
107 |
ccccgaagagatttccaattgtcaagagtttgagtcacaggatacat |
153 |
Q |
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| T |
42468392 |
ccccaaagagatttccaattgtcaagagttcgagtcacaagatacat |
42468438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 379
Target Start/End: Complemental strand, 3352608 - 3352427
Alignment:
| Q |
198 |
ctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaat |
297 |
Q |
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| T |
3352608 |
ctttgaaaaagtaggcttcattagtcttatgagaagcaaaagctgcatcaattccattttcaaagattgtgccacggaaacacataaacccgtcgataat |
3352509 |
T |
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| Q |
298 |
gttctcgatactttgaacgagactattggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
379 |
Q |
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| T |
3352508 |
gttcttgatactttgaaccagacggttggttccataatctatacgagcatacttgtctcctttgaataagtaaacttatttg |
3352427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 42046115 - 42046167
Alignment:
| Q |
327 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
379 |
Q |
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| T |
42046115 |
ttccatagtctatacgagcatattggtctcctttaaataagtaagcttctttg |
42046167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 63205 - 63358
Alignment:
| Q |
227 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
326 |
Q |
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| T |
63205 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
63304 |
T |
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| Q |
327 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
380 |
Q |
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| T |
63305 |
tgccatagtctatacgagcatacttgtctcctctgaacaagtaaacctctttgt |
63358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 37149 - 37302
Alignment:
| Q |
227 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
326 |
Q |
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| T |
37149 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
37248 |
T |
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| Q |
327 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
380 |
Q |
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| T |
37249 |
tgccatagtctatacgagcatacttatctcctctgaacaagtaaacctctttgt |
37302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 14452764 - 14452708
Alignment:
| Q |
323 |
ttggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
379 |
Q |
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| T |
14452764 |
ttggtgccatagtctatacgagcatacttgtctcctttgaataagtgaacttctttg |
14452708 |
T |
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