View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342-Insertion-6 (Length: 371)
Name: NF5342-Insertion-6
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 2902450 - 2902087
Alignment:
| Q |
8 |
cttttagagttggtattgagattccaacaatagaagttagatatgagcatttaattgttgacgcggaagcttatgttggaggcagggctttaccagcttt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2902450 |
cttttagagttggtattgagattccaacaatagaagttagatatgagcatttaattgttgacgcggaagcttatgttggaggcagggctttaccaacttt |
2902351 |
T |
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| Q |
108 |
gttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttactttgcaattagtctcataaccatgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902350 |
gttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttactttgcaattagtctcataaccatgc |
2902251 |
T |
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| Q |
208 |
tttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902250 |
tttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacc |
2902151 |
T |
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| Q |
308 |
tcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttcttttagctttg |
371 |
Q |
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| T |
2902150 |
tcgcaggatgacactgcttcttggtcctccaagttctggaaagaccacacttcttttagctttg |
2902087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 2882563 - 2882923
Alignment:
| Q |
8 |
cttttagagttggtattgagattccaacaatagaagttagatatgagcatttaattgttgacgcggaagcttatgttggaggcagggctttaccagcttt |
107 |
Q |
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||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| |||||| || ||||||| ||| |||||||||||||| ||| |||| |
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| T |
2882563 |
cttttagagttgggattgagattccagcaattgaagttagatatgagcacctaaatgttgaggcagaagcttttgtgggaggcagggctttgccaacttt |
2882662 |
T |
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| Q |
108 |
gttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttactttgcaattagtctcataaccatgc |
207 |
Q |
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||||||||| |||| || ||||||||||||||| ||||||||||||||||||||| | || ||||| || ||||||||||||||||| | |
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| T |
2882663 |
gttgaactcggttactaacacagtcgaggtaaatacaaccagattctactttctcagttgttattgttgtttc-----gcaattagtctcataacttttt |
2882757 |
T |
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| Q |
208 |
ttt--ctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaa |
305 |
Q |
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||| |||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2882758 |
tttttctttggtctttcagagtatcttgatttccctccatattctcacaagcagaaagaaacaaatgactatccttaaagatgtaagtggaatagtcaaa |
2882857 |
T |
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| Q |
306 |
cctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttcttttagctttg |
371 |
Q |
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| T |
2882858 |
cctcgcaggatgacactgcttcttggtcctccaagttctggaaagaccacacttcttttggctttg |
2882923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 2872696 - 2872803
Alignment:
| Q |
257 |
caaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccaca |
356 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
2872696 |
caaaaagaaacatatgactatccttaaagatgtaagtggaatagtcaaacctggtaggatggcactgcttcttggtcctccaagttccggaaagaccaca |
2872795 |
T |
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| Q |
357 |
cttctttt |
364 |
Q |
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|||||||| |
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| T |
2872796 |
cttctttt |
2872803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 2872346 - 2872383
Alignment:
| Q |
8 |
cttttagagttggtattgagattccaacaatagaagtt |
45 |
Q |
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| T |
2872346 |
cttttagagttgggattgagattccaacaattgaagtt |
2872383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 44226733 - 44226648
Alignment:
| Q |
282 |
aaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttcttttagc |
367 |
Q |
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| T |
44226733 |
aaagatgttagcggaatcgttaaacctcgtaggatgacactacttttaggtcctcctggttcaggaaagaccacacttcttttagc |
44226648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 44237531 - 44237446
Alignment:
| Q |
282 |
aaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttcttttagc |
367 |
Q |
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| T |
44237531 |
aaagatgttagcggaattgttaaacctcgtaggatgacactacttttaggtcctcctggttcaggaaagaccacgcttctgttagc |
44237446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 39592926 - 39592866
Alignment:
| Q |
311 |
caggatgacacttcttcttggtcctccaagttctggaaagaccacacttcttttagctttg |
371 |
Q |
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|||||||||| | ||||| || ||||||||||||||||||||||||||||| || |||||| |
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| T |
39592926 |
caggatgacattgcttctgggacctccaagttctggaaagaccacacttctcttggctttg |
39592866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 42177746 - 42177690
Alignment:
| Q |
311 |
caggatgacacttcttcttggtcctccaagttctggaaagaccacacttcttttagc |
367 |
Q |
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| T |
42177746 |
caggatgacactccttctaggtcctccaggttctggaaaaacaacattgcttttagc |
42177690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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