View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342-Insertion-8 (Length: 275)
Name: NF5342-Insertion-8
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 382048 - 381984
Alignment:
| Q |
8 |
aaacctctattactttcccagtaacagttgattcattcaaatgtgtagtctttaaactctctcca |
72 |
Q |
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| T |
382048 |
aaacctctactactttcccagtaacagttgattcattcaaatgtgtagtctttaaattctctcca |
381984 |
T |
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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 41984389 - 41984491
Alignment:
| Q |
167 |
ttagctttcatgaagatg-aatgtgatacataaatactc----aatattaattttatgctcctcaatttaccagttctgtttgcaaagttagtccaaatt |
261 |
Q |
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| T |
41984389 |
ttagctttcatgaagagggaatgcgatacataagtactcttgtaatattaattttatgctcctcaatttaccggttctgttcgcacaattcgtccaaatt |
41984488 |
T |
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| Q |
262 |
tta |
264 |
Q |
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||| |
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|
| T |
41984489 |
tta |
41984491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 38287927 - 38287963
Alignment:
| Q |
98 |
ttagtgagatatagttagagatttgttagtattgatt |
134 |
Q |
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| T |
38287927 |
ttagttagatatagttaaagatttgttagtattgatt |
38287963 |
T |
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