View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342_high_1_N (Length: 444)
Name: NF5342_high_1_N
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 37270387 - 37270692
Alignment:
| Q |
19 |
agatgcttctatttctccaacaattattacagatttagatgcttccatcaaatgtgcagattacttctaaaataatccctctcctgctagcataaattta |
118 |
Q |
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| T |
37270387 |
agatgcttctatttctccaacaattattacagatttagatgcttccattaaatgtgcagattacttctaaaataatccctctcctgctagcataaattta |
37270486 |
T |
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| Q |
119 |
ttattagtcagtcgaaattctagtcaataacagacttcgatgctaatagtaacgatgtgccaaatataactccaaaaatccggtcacaactccacaaagt |
218 |
Q |
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| T |
37270487 |
ttattagtcagttgaaattctagtcaataacagacttcgatgctaatagtaacgatgtgctaaatataactccaaaaatccggtcacaactccacaaagt |
37270586 |
T |
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| Q |
219 |
aaagtgaccggaatggactaccnnnnnnncgtgttactatttgcaacaatagttaaaagaacttactaaattcatccaaggaagttttatcaacactctc |
318 |
Q |
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| T |
37270587 |
aaagcgaccggaatggactaccaaaaaaacgtgttactatttgcaacaatagttaaaagaacttactaaattcatccaaggaagttttatcaacactctc |
37270686 |
T |
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| Q |
319 |
tccact |
324 |
Q |
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| T |
37270687 |
tccact |
37270692 |
T |
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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 47164465 - 47164400
Alignment:
| Q |
377 |
acagtcagtgatagagagcacacgcatactaagatgatcagcacgagcgagaacggctatgcctgc |
442 |
Q |
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| T |
47164465 |
acagtcagacatagagagcactcgcatactaagatgatcagcacgagagagaacggctatgcctgc |
47164400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 47175813 - 47175748
Alignment:
| Q |
377 |
acagtcagtgatagagagcacacgcatactaagatgatcagcacgagcgagaacggctatgcctgc |
442 |
Q |
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| T |
47175813 |
acagtcagacatagagagcacacgcatactaacatgatcagcacgagtgagaacggctatgcctgc |
47175748 |
T |
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