View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342_high_2 (Length: 396)
Name: NF5342_high_2
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 11625951 - 11625580
Alignment:
| Q |
1 |
acttttagcccgttactactctcgattaagagactgaatta-tcaaggaaattacactcgatgaaataataaaattatctttgatggtaaagatacaaaa |
99 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625951 |
acttttagccagttactactctcgattaagagagtgaattaatcaaggaaattacactcgatgaaataataaaattatctttgatggtaaagatacaaaa |
11625852 |
T |
|
| Q |
100 |
gtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggtttcaagcttttggttacatg |
199 |
Q |
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| T |
11625851 |
gtcaccatcaaaaatctttgtcgcatcagatctccaacagatgcactgacggtgcatctagttgttgcctgactcatggtttcaagcttttggttacatg |
11625752 |
T |
|
| Q |
200 |
ggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagcttttgtaaccctacgtgagaaagagagagtatatataggagagtgaacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||| |||||||| |
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| T |
11625751 |
ggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagtttttgtaaccctaagtgagaatgagagggtatatataggaaagtgaacg |
11625652 |
T |
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| Q |
300 |
tgagtgattgaatgtgtgaggttgttgtgatgatactgaatgagtcaatatatttagtggatgagaaaaatga |
372 |
Q |
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| T |
11625651 |
tgagtgattgaatgtgtga-gaggttgtgatgatactgaatgagtcaatatatttagtggatgagaaaaatga |
11625580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 31050051 - 31049947
Alignment:
| Q |
82 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggttt |
181 |
Q |
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| T |
31050051 |
gatggtaaagatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcattaatagagaatctagttgttgtttgactcatcgttt |
31049952 |
T |
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| Q |
182 |
caagc |
186 |
Q |
| |
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||||| |
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| T |
31049951 |
caagc |
31049947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 31040035 - 31039971
Alignment:
| Q |
82 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcact |
146 |
Q |
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| T |
31040035 |
gatggtaaacatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcact |
31039971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 21185285 - 21185321
Alignment:
| Q |
41 |
atcaaggaaattacactcgatgaaataataaaattat |
77 |
Q |
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| T |
21185285 |
atcaaggaaatcacactcgatgaaataataaaattat |
21185321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 31046195 - 31046135
Alignment:
| Q |
88 |
aaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactga |
148 |
Q |
| |
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||||||| | ||||||| |||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
31046195 |
aaagatatagaagtcacaatcaaagatatttgtagcatcagatctacaacatatgcactga |
31046135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 31015639 - 31015595
Alignment:
| Q |
94 |
acaaaagtcaccatcaaaaatctttgtagcatcagatctccaaca |
138 |
Q |
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| T |
31015639 |
acaaaagtcaccttcatcgatctttgtagcatcagatctccaaca |
31015595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 50968789 - 50968819
Alignment:
| Q |
41 |
atcaaggaaattacactcgatgaaataataa |
71 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50968789 |
atcaaggaaattacactcgatgaaataataa |
50968819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 50970901 - 50970931
Alignment:
| Q |
41 |
atcaaggaaattacactcgatgaaataataa |
71 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50970901 |
atcaaggaaattacactcgatgaaataataa |
50970931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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