View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342_high_6 (Length: 345)
Name: NF5342_high_6
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 43414863 - 43415204
Alignment:
| Q |
1 |
aatctttgaaaggtataagtgcaataacaccttcatcactttctcctgaagctgcaaattttgctgaaaccctccttgcaacagctgttcaaaaaacacg |
100 |
Q |
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| T |
43414863 |
aatctttgaaaggtataagtgcaataacaccttcatcactttctcctgaagctgcaaattttgctgaaaccctccttgcaacagctgttcaaaaaacacg |
43414962 |
T |
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| Q |
101 |
agaatttgatgatcatcttacttctagttttggaggaggaggccaactcctttctttgaacagatccaaagtgaattcatggtgag----atagtactac |
196 |
Q |
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| T |
43414963 |
agaatttgatgatcatcttacttctagttttggaggaggaggccaactcctttctttgaacagatccaaagtgaattcatggtgagatatatagtactac |
43415062 |
T |
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| Q |
197 |
ctttaattttcaaatattccaccatgcatgtgaactatagccacttaatttttattaaaatatagatactagtttggtatgagttatgaatcttatgatg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43415063 |
ctttaattttcaaatattccaccatgcatgtgaactatagccacttaatttttattaaaatatagatactagtttggtatgagttttgaatcttatgatg |
43415162 |
T |
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| Q |
297 |
tcaaatatatgtagagtttgatctgctactaattatatttga |
338 |
Q |
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| T |
43415163 |
tcaaatatatgtagagtttgatctgctactaattatatttga |
43415204 |
T |
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