View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5342_high_7 (Length: 335)
Name: NF5342_high_7
Description: NF5342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5342_high_7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 62 - 335
Target Start/End: Complemental strand, 47176252 - 47175979
Alignment:
| Q |
62 |
ccaagcaatgtgcgatctagagtggatacaatcaaccaagactcggtcactgtattctgatgaaactatagccaaaaggggttgtgataaacaatcattt |
161 |
Q |
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| T |
47176252 |
ccaagcaatgtgcgatctagagtggatacaatcaaccaagactcggtaactgtattctcatgaaactatagccaaaaggggttgtgataaacaatcattt |
47176153 |
T |
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| Q |
162 |
gtgtattaaaaatgcttgcgaaaaaagggctagtaaaggaacaaaccaaagctctttggaaaaccaccgtccacacttgattgtcacatcagccaagata |
261 |
Q |
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| T |
47176152 |
gtgtattaaaaatgcttgcgaaaaaagggctagtaaaggaacaaaccaaagctctttggaaaaccaccgtccacacttgattgtcacatcagccaagata |
47176053 |
T |
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| Q |
262 |
agcatgctgaattttaccacctgctgcttcattattaataacttgataaagttaataaattatcatttccttat |
335 |
Q |
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| T |
47176052 |
agcatgctgaattttaccacctgctgcttcattattaataacttgataaaattaataaattatcatctccttat |
47175979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 47164946 - 47164760
Alignment:
| Q |
43 |
cagtgatacaaagtaaaacccaagcaatgtgcgatctagagtggatacaatcaaccaagactcggtcactgtattctgatgaaactatagccaaaagggg |
142 |
Q |
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| T |
47164946 |
cagtgatacaaagtaaaacccaggcaatgtgcgatctaaagtggataccatcaaccaagactcagtaactgtattctcatggaactatagccaaaagggg |
47164847 |
T |
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| Q |
143 |
ttgtgataaacaatcatttgtgtattaaaaatgcttgcgaaaaaagggctagtaaaggaacaaaccaaagctctttggaaaaccaccg |
230 |
Q |
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| T |
47164846 |
ttgtaagaaacaagcatttatgtattaaaaatgcttgc-aaaaatgggctagtaagggaacaatccaaaactccttggaaaacaaccg |
47164760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 47164737 - 47164655
Alignment:
| Q |
231 |
tccacacttgattgtcacatcagccaagataa--gcatgctgaattttaccacctgctgcttcattattaataacttgataaa |
311 |
Q |
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| T |
47164737 |
tccacacttgatagtcatatcagccaaaaaaaaagtatgttgaatgttaccatctgctgcttcattattaataacttgataaa |
47164655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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