View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343-Insertion-2 (Length: 753)
Name: NF5343-Insertion-2
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 706; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 7 - 753
Target Start/End: Original strand, 25896070 - 25896818
Alignment:
| Q |
7 |
atgaagagcacttaatggaggagaaatctgatgtcattattactaataaatccaaaaggtcaagggaagtaattggcaatgatgatcaacaattggaaaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896070 |
atgaagagcacttaatggaggagaaatctgatgtcattattactaataaatccaaaaggtcaagggaagtaattggcaatgatgatcaacaattggaaaa |
25896169 |
T |
|
| Q |
107 |
gcaaagttggctcacaagccacatcagcaaccacatcccatcata--ccataacaaaaaatggcagcaacacaaagcacacattctcctatggaggttac |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25896170 |
gcaaagttggctcacaagccacatcagcaaccacatcccatcatataccataacaaaaaatggcagcaacacaaagcacacattctcctatggaggttac |
25896269 |
T |
|
| Q |
205 |
ccagtcaaagcattttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgagg |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896270 |
ccagtcaaagcattttttatcggaaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgagg |
25896369 |
T |
|
| Q |
305 |
cagttccatgcatcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgtta |
404 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25896370 |
cagttccgtgtatcaaagaccttgtccgtgtctataaaccggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgtta |
25896469 |
T |
|
| Q |
405 |
ctcgattggctttgatcattatttttcccttgatagtattggtagaagtggaggtatcgctatattttggcataactctgctgattgttctcttttgaat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25896470 |
ctcgattggctttgatcattatttttccgttgatagtattggtagaagtggaggtatcgctatattttggcataactctgctaattgttctcttttgaat |
25896569 |
T |
|
| Q |
505 |
tactcccaacaatttattaatatgatcatattcatgatcctatcaaaggtaattgacgcctcactgctttttacggttactctgacactggcagaagaag |
604 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896570 |
tactcccaacaatttattaatatgatcatattcatgatcctatcaaaggtaattgacgcctcactgctttttacggttactctgacactggcagaagaag |
25896669 |
T |
|
| Q |
605 |
agactcttgggacatgcttctctcccttagaaacctattcgatgatccatggtgtataattggtgattttaatgaccatctatctttagctgacaagaga |
704 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896670 |
agactcttgggacatgcttctctcccttagaaacctattcgatgatccatggtgtataattggtgattttaatgaccatctatctttagctgacaagaga |
25896769 |
T |
|
| Q |
705 |
aatgggccggatagagctccttggcttattagaggtttccaagatgttg |
753 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25896770 |
aatgggccagatagagctccttggcttattagaggtttccaagatgttg |
25896818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 447
Target Start/End: Original strand, 35609631 - 35609861
Alignment:
| Q |
217 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
316 |
Q |
| |
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|||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||| |||||||||||| |||| |||||| |||||||||| || | |
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| T |
35609631 |
ttttttatcggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcgtggcctaggcaatgtcaaggcagttccctgta |
35609730 |
T |
|
| Q |
317 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctt |
416 |
Q |
| |
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|||||||||| || |||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||| |
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| T |
35609731 |
tcaaagacctcgtccgtgtctataaaccggacattgttatccttattgagactttatgcaataataataaaatttctggtttgaagtatgcgattggctt |
35609830 |
T |
|
| Q |
417 |
tgatcattatttttcccttgatagtattggt |
447 |
Q |
| |
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|||| || |||| || ||||| |||||||| |
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| T |
35609831 |
tgattatcatttctctgttgattgtattggt |
35609861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 447
Target Start/End: Complemental strand, 4021177 - 4020947
Alignment:
| Q |
217 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
316 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||| |||||||||||| |||| |||||| |||||||||| || | |
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| T |
4021177 |
ttttttatcggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcgtggcctaggcaatgtcaaggcagttccctgta |
4021078 |
T |
|
| Q |
317 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctt |
416 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||| |
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| T |
4021077 |
tcaaagacctcgtccgtgtctataaaccggacattgttatccttattgagactttatgcaataataataaaatttctggtttgaagtatgcgattggctt |
4020978 |
T |
|
| Q |
417 |
tgatcattatttttcccttgatagtattggt |
447 |
Q |
| |
|
|||| || |||| || ||||| |||||||| |
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| T |
4020977 |
tgattatcatttctctgttgattgtattggt |
4020947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 217 - 391
Target Start/End: Original strand, 21948486 - 21948660
Alignment:
| Q |
217 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
316 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||||||||||||||||||| | ||||||| ||||||||| || |||| |||||| |||||||||| || | |
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|
| T |
21948486 |
ttttttattggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcggggcctaggcaatgtcaaggcagttccctgta |
21948585 |
T |
|
| Q |
317 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaattt |
391 |
Q |
| |
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|||||||||| || |||||||||||| |||| |||||||| || ||||| |||||| |||||||||||||||| |
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|
| T |
21948586 |
tcaaagacctcgtccgtgtctataaaccggacattcttattctcattgagactttatgcaataataataaaattt |
21948660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 215 - 389
Target Start/End: Complemental strand, 240747 - 240573
Alignment:
| Q |
215 |
cattttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatg |
314 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||| || |||||||| | || | |||||||||| || |
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| T |
240747 |
cattttttatcggcaggacctggctcccaagcctgtcgggagtcatgaatatcatttcttggaactgccgcggtttaggaagtgccaaggcagttccgtg |
240648 |
T |
|
| Q |
315 |
catcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaat |
389 |
Q |
| |
|
|| | ||||||| | || ||||||||| |||||||| |||| ||||||||||| || || || |||||||||| |
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|
| T |
240647 |
tattagagaccttatccgcgtctataaaccggatattgttatacttattgaaacattggtgcatgataataaaat |
240573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 217 - 392
Target Start/End: Complemental strand, 13491022 - 13490847
Alignment:
| Q |
217 |
ttttttatcggcag-gacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgc |
315 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||| ||| | |||||| |||| ||| ||||||||| || ||||| ||||| |||||||||| || |
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|
| T |
13491022 |
ttttttatcggcagagact-ggctcccaggcctgctgggggcaatgaatgtcatctcttggaactgtcgaggcttaggaaatgttaaggcagttccttgt |
13490924 |
T |
|
| Q |
316 |
atcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttc |
392 |
Q |
| |
|
|| ||||||||| | || ||||||||||||||| || |||| | |||||||| |||||| | | |||||||||||| |
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|
| T |
13490923 |
ataaaagaccttatccgcgtctataaatcggatgttgttattttaattgaaaccttagttgaaagtaataaaatttc |
13490847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 214 - 452
Target Start/End: Original strand, 20119391 - 20119629
Alignment:
| Q |
214 |
gcattttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccat |
313 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||||||| || |||||||| ||| | | |||||| || || | || ||||| |||||||||| |
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|
| T |
20119391 |
gcattttttatcggcagagcctggttcccaggcctgccggaagaaatgaatataatatcgtggaactgccgaggcctggggaatgttaaggcagttcctg |
20119490 |
T |
|
| Q |
314 |
gcatcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattgg |
413 |
Q |
| |
|
|| |||||||| || |||||||||||| |||| ||| | ||||| |||||||| || || ||| ||||||||||||| ||| || ||||| ||||| |
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|
| T |
20119491 |
aaattaaagacctagtccgtgtctataaaccggacattgtaatcctcattgaaacattggtgaatggtaataaaatttcagatttatgctactctattgg |
20119590 |
T |
|
| Q |
414 |
ctttgatcattatttttcccttgatagtattggtagaag |
452 |
Q |
| |
|
|||||| || ||||||| |||| ||||||||||||| |
|
|
| T |
20119591 |
ttttgataatcatttttcagttgaccgtattggtagaag |
20119629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 455
Target Start/End: Complemental strand, 27647411 - 27647173
Alignment:
| Q |
217 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
316 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||| || | |||||||||||||||| |||||| || || || || || || |||||||||| | | |
|
|
| T |
27647411 |
ttttttattggcagagcctggctcccaggcctgccaggcgaaatgaatatcatagcttggaactgccgaggcttggggaacgttaaggcagttccgtcaa |
27647312 |
T |
|
| Q |
317 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctt |
416 |
Q |
| |
|
| |||||| | || || ||||||||| |||| ||| | || |||||||||||| | |||||| |||||||||||| ||| || ||| | |||||||| |
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|
| T |
27647311 |
taaaagacatggtccgagtctataaaccggacattgtaattcttattgaaactcttgttaatggaaataaaatttcagatttatgctacacaattggctt |
27647212 |
T |
|
| Q |
417 |
tgatcattatttttcccttgatagtattggtagaagtgg |
455 |
Q |
| |
|
|||| || |||| || ||||| | ||||| |||||||| |
|
|
| T |
27647211 |
tgataatcatttctcagttgatcgaattggcagaagtgg |
27647173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 340
Target Start/End: Original strand, 35492158 - 35492285
Alignment:
| Q |
215 |
cattttttatcggcaggacttggctcccaagcctgccgggagtcatgaata--tcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttcca |
312 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||||||||| | ||||||| ||||| | ||| |||| || ||| |||||||||| |
|
|
| T |
35492158 |
cattttttatcggcagagcttggctcccgggcctgtcgggagtcatgaatatgtaatagcttggaactattttggcctaggaaacgtcaaggcagttccc |
35492257 |
T |
|
| Q |
313 |
tgcatcaaagaccttgtacgtgtctata |
340 |
Q |
| |
|
|| || ||| ||||||| ||||||||| |
|
|
| T |
35492258 |
tgtataaaataccttgtctgtgtctata |
35492285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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