View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343-Insertion-3 (Length: 425)
Name: NF5343-Insertion-3
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343-Insertion-3 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 2516229 - 2515812
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcattt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516229 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagcggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcattt |
2516130 |
T |
|
| Q |
108 |
gtttttcctatgtattgttatgttgtcaattttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcatatcta |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516129 |
gtttttcctatgttttgttatgttgtcaattttttcaaatcttttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcatatcta |
2516030 |
T |
|
| Q |
208 |
tgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttttctgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516029 |
tgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttttctgca |
2515930 |
T |
|
| Q |
308 |
ttgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcgttcacatgtatggtatactccaacaccgacacatcacat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515929 |
ttgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcattcacatgtatggtatactccaacaccgacacatcacat |
2515830 |
T |
|
| Q |
408 |
gtgattacattcaatcag |
425 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2515829 |
gtgattacattcaatcag |
2515812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 2496656 - 2496344
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcattt |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
2496656 |
tgagggtcttgagaatggccctgcagccttgattggcctatatagtggtcgcaatgttggtaaacaagtggttgtcgttgctcgggaatagaaagcattt |
2496557 |
T |
|
| Q |
108 |
gtttttcctatgtattgttatgttgtcaatt-ttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcatatct |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||| |||||| || | ||||||| |||||||||| | |
|
|
| T |
2496556 |
gcttttcctatgtattgttatgttgtcaatttttttcaaatcttttatagaatgtttagttgtctttgtaccacttttgcagtcatc-tttttcatatgt |
2496458 |
T |
|
| Q |
207 |
atgaat-----atatgatgaga-ctgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttcctt |
300 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| | ||||||||||| |||| | ||| ||||||||| |||| ||||||||||||| ||| | | |
|
|
| T |
2496457 |
atgaatgtatgatatgatgagacctgtgttcctgatagttcagggagctgtataatgtatta--gtgttattgatagaaaataaaagcatttgcttgcct |
2496360 |
T |
|
| Q |
301 |
ttctgcattgtcatct |
316 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
2496359 |
ttgtgcattgtcatct |
2496344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 2511958 - 2511870
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
96 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2511958 |
tgagggtcttgagaaaggtcctgcagctttggttggcatatttagtggtaaaaatgttggcaaacaagtgcttgttgttgctcgtgaat |
2511870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 2432765 - 2432853
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
96 |
Q |
| |
|
||||||||||||||| |||||||| || ||| ||||| | | |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2432765 |
tgagggtcttgagaatggtcctgctgcattgattggcctatacagtggtcgcaatgttggtaaacaagtggttgttgttgctcatgaat |
2432853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 2436126 - 2436214
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
96 |
Q |
| |
|
||||||||||||||| |||||||| || ||| ||||| | | |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2436126 |
tgagggtcttgagaatggtcctgctgcattgattggcctatatagtggtcgcaatgttggtaaacaagtggttgctgttgctcatgaat |
2436214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 2505337 - 2505249
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
96 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2505337 |
tgagggtcttgagaaaggccctgaagccttggttggcatatttagtggcaaaaatgttggcaaacaagtgcttgttgttgctcgtgaat |
2505249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 2429783 - 2429865
Alignment:
| Q |
8 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctc |
90 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2429783 |
tgagggtcttgagaatggccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctc |
2429865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University