View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343-Insertion-4 (Length: 286)
Name: NF5343-Insertion-4
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 286
Target Start/End: Complemental strand, 1960040 - 1959760
Alignment:
| Q |
6 |
caacatgcagtcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagctttt |
105 |
Q |
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| T |
1960040 |
caacatgcaatcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagctttt |
1959941 |
T |
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| Q |
106 |
atagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatga |
205 |
Q |
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| T |
1959940 |
atagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatga |
1959841 |
T |
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| Q |
206 |
ttatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgatacac |
286 |
Q |
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| T |
1959840 |
ttatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgatacac |
1959760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 49 - 286
Target Start/End: Original strand, 2023328 - 2023565
Alignment:
| Q |
49 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctat |
148 |
Q |
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| T |
2023328 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctat |
2023427 |
T |
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| Q |
149 |
aaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttct |
248 |
Q |
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| T |
2023428 |
aaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttct |
2023527 |
T |
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| Q |
249 |
cttttgccatatttcaagattggaaatttctgatacac |
286 |
Q |
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| T |
2023528 |
cctttgccatatttcaagattggaaatttctgatacac |
2023565 |
T |
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