View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5343-Insertion-6 (Length: 276)

Name: NF5343-Insertion-6
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5343-Insertion-6
NF5343-Insertion-6
[»] chr7 (1 HSPs)
chr7 (7-276)||(31981259-31981538)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 31981538 - 31981259
Alignment:
Q  7 agcaactagcaagtaaggtacataccttaaggttgatagatatatatatgctaaccttaaccgttttgtt----------gtcacacaatgagagaataa 96  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  31981538 agcaactagcaagtaaggtacataccttaaggttgata----tatatatgctaaccttaaccgttttgttttggtttattgtcacacaatgagagaataa 31981443  T
Q  97 gacaaaaactaaagaaaatatgagttggcagtgttgtgtgtgcatatttgtggtgtcagattcagagaggcacaaatatgcaaatgcaacgtagtattag 196  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981442 gacaaaaactaaagaaaatatgagttggcagtgttgtgtgcgcatatttgtggtgtcagattcagagaggcacaaatatgcaaatgcaacgtagtattag 31981343  T
Q  197 ccattagggtagggagagtgtgtgtgtttgttgttgtactatatgctattgagt----gtgtgagtgctcccacttcttcttgt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  31981342 ccattagggtagggagagtgtgtgtgtttgttgttgtactatatgctattgagtgtgagtgtgagtgctcccacttcttcttgt 31981259  T

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