View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343-Insertion-7 (Length: 220)
Name: NF5343-Insertion-7
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343-Insertion-7 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 26388383 - 26388572
Alignment:
| Q |
31 |
atgtgctattcatcttgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgctcannnnnnnnatatgaattgttgagtc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26388383 |
atgtgctattcatcttgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgctcattttttttatatgaattgttgagtc |
26388482 |
T |
|
| Q |
131 |
ctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcatttttcttctc |
220 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26388483 |
ctctgatgtgctaagtatcctgtagcacaacttgagtattgttcatcactttgtagccgtcaagatcttccaacattcatttttcttctc |
26388572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 1774001 - 1773937
Alignment:
| Q |
151 |
tttagcacaacttgagtattgt-gcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
1774001 |
tttagcacaacttgagtattgttgcttcattttgtagtcgtcaagaccttctaacattcattttt |
1773937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 1774078 - 1774021
Alignment:
| Q |
46 |
tgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
1774078 |
tgagcacaatctgagtattgatgcttcactcaatagccatcaaccatgctcctttgct |
1774021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 19473318 - 19473232
Alignment:
| Q |
128 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
19473318 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19473232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 19544243 - 19544157
Alignment:
| Q |
128 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
19544243 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19544157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 19588453 - 19588539
Alignment:
| Q |
128 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
19588453 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19588539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 19473371 - 19473325
Alignment:
| Q |
168 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
19473371 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19473325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 19544296 - 19544250
Alignment:
| Q |
168 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
19544296 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19544250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 19588400 - 19588446
Alignment:
| Q |
168 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
19588400 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19588446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University