View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5343_high_1 (Length: 700)

Name: NF5343_high_1
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5343_high_1
NF5343_high_1
[»] chr4 (1 HSPs)
chr4 (46-690)||(31747470-31748114)


Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 46 - 690
Target Start/End: Original strand, 31747470 - 31748114
Alignment:
Q  46 ttaacttcccatagcttttgcatggaaattacagctgaaatttattatgactaataagctttaaaaatggaagttatcgaatataaatcaaatatgtcag 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31747470 ttaacttcccatagcttttgcatggaaattacagctgaaatttattatgactaataagctttaaaaatggaagttatcgaatataaatcaaatatgtcag 31747569  T
Q  146 tgtcgcattagtgccagacttcaaacacatcttcaatttgaggtgccggtggtagaagctttacatagtctcttggtatattttcatgttggtaaaaact 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31747570 tgtcgcattagtgccagacttcaaacacatcttcaatttgaggtgccggtggtagaagctttacatagtctcttggtatatttttatgttggtaaaaact 31747669  T
Q  246 aattcacatctcaatcatgtttggtttgatgtcagcaacaaatattatagtagggtcttctgaagcatctaaaggataataaattagaccaaaagatggc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31747670 aattcacatctcaatcatgtttggtttgatgtcagcaacaaatattatagtagggtcttctgaagcatctaaaggataataaattagaccaatagatggc 31747769  T
Q  346 tattacaaagttacagtaatttatttatttttacattgtgaacccatattagcaacaagattaagtaaagnnnnnnngtgtgatgaaagatgtatctttt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  31747770 tattacaaagttacagtaatttatttatttttacattgtgaacccatattagcaacaagattaagtaaagaaaaaaagtgtgatgaaagatgtatctttt 31747869  T
Q  446 aagtattatatcttttctttcttttcattataaaatatacatagtttatacacagattttcttctgagagtgactttgttgcatatgtaaatattattac 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31747870 aagtattatatcttttctttcttttcattataaaatatacatagtttatacacagattttcttctgagagtgactttgttgcatatgtaaatattattac 31747969  T
Q  546 tagaaaccaccttcattgtacctaaaagcttgaactgcaatttaaatctatttctaatgaacttgagtcaatgtctctctcatacttgctgttcaagtca 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31747970 tagaaaccaccttcattgtacctaaaagcttgaactgcaatttaaatctatttctaatgaacttgagtcaatgtctctctcatacttgctgttcaagtca 31748069  T
Q  646 agcatttgtgaaaactccgatttcctcggttttttgccacatatt 690  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  31748070 agcatttgtgaaaactccgatttccttggttttttgccacatatt 31748114  T

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