View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_11 (Length: 408)
Name: NF5343_high_11
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 42275502 - 42275896
Alignment:
| Q |
1 |
cgttgatggggagtgatgatgagctgactagctggttgacgaacaaaattgttttcttgagacattagaggttgtgggaacaaaaggaagcatatagttt |
100 |
Q |
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| T |
42275502 |
cgttgatggggagtgatgatgagctgactagctggttgacgaacaaaattgttttcttgagacattagaggttgtgggaacaaaaggaagcatatagttt |
42275601 |
T |
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| Q |
101 |
gcaagaggattgggaacataactagagactttgtgcattttgccatcaagttgttttggcttagacttgtacaaattggtgcaatttttgagctaagagt |
200 |
Q |
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| T |
42275602 |
gcaagaggattgggaacataactagagactttgtgcattttgccatcaagttgttttggcttagacttgtacaa-ttggtgcaatttttgagctaagagt |
42275700 |
T |
|
| Q |
201 |
aggtttctttaaatgaagttgcggtaggaagagaagagaatatggaaagcatcaaaatatgatactacattacgtgcaggttgttccaatggctttgaag |
300 |
Q |
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| T |
42275701 |
aggtttctttaaatggagttgcggtaggaagagaagagaatatggaaagcatcaaaatatgatactacattacgtgcaggttgttgcaatggctttgaag |
42275800 |
T |
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| Q |
301 |
tttgaagaagatctgtgacaatctattgtcttaaagcaaggaccacacgctttattgtacttgctttctattgcctttgccaatttggacaatatt |
396 |
Q |
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| T |
42275801 |
tttgaagaagatctgtgacaatctattgtcttaaagcaaggaccacacgctttattgtacttgctttctattgcctttgccaatttggacaatatt |
42275896 |
T |
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