View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_12 (Length: 403)
Name: NF5343_high_12
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 44126360 - 44126509
Alignment:
| Q |
18 |
tgttccagaatcacacaacgtgcaatcaacacttcaatcattaacccatcgttcattactctctatatatgtaattatagtttctaattgacaaaaacgg |
117 |
Q |
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| T |
44126360 |
tgttccagaatcacacaacgtgcaatcaacacttcaatcattaacccatcgttcattactctctatatatgtaattatagtttctaattgacaaaaacag |
44126459 |
T |
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| Q |
118 |
attgacaaaagttggatcactgttcaagtacgattcaatttctaatttga |
167 |
Q |
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| T |
44126460 |
attgacaaaagttggatcactgttcaagtacgattcaatttctaatttga |
44126509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 44126528 - 44126590
Alignment:
| Q |
157 |
ttctaatttgagtttgtgtttccatgaatattttgctgtcaaatttgtgcataatattttaat |
219 |
Q |
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| T |
44126528 |
ttctaatttgagtttgtgtttccatgaatattttgctgtcaaatttgtgcataatattttaat |
44126590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 44128456 - 44128491
Alignment:
| Q |
211 |
tattttaatctatagttgcttatgtgggctaatcaa |
246 |
Q |
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| T |
44128456 |
tattttaatctatagttgcttatgtgggctaatcaa |
44128491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 557145 - 557295
Alignment:
| Q |
18 |
tgttccagaatcacacaacgtgcaatcaacacttcaatcattaacccatcgttcattact-ctctatatatgtaattatagtttctaattgacaaaaacg |
116 |
Q |
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| T |
557145 |
tgttccagaattacacaatgtgcaatcaacacttcaatcgttaacccatcgttcattacttctctatatatgtaattatagtttctaattgacaaaaacg |
557244 |
T |
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| Q |
117 |
gattgacaaaagttggatcactgttcaagtacgattcaatttctaatttga |
167 |
Q |
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| T |
557245 |
gattgacaaaagttggatcactgttcatgtacgattcaatttccaatttga |
557295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 557314 - 557391
Alignment:
| Q |
157 |
ttctaatttgagtttgtgtttccatgaatattttgctgtcaaatttgtgcataatattttaatctatagttgcttatg |
234 |
Q |
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| T |
557314 |
ttctaatttgagtttgtgtttccatgaatattttgctgtcaaatttgtacataatattttaatctataattgcttatg |
557391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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