View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_16 (Length: 370)
Name: NF5343_high_16
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 4059070 - 4059410
Alignment:
| Q |
20 |
tgattatttatgtttgttaaattgtgatttcaggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggat |
119 |
Q |
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| T |
4059070 |
tgattatttatgtttgttaaattgtgatttcaggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggat |
4059169 |
T |
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| Q |
120 |
gaaaatagacggttgcaaaaagaagtgcaagagttaagagcattgaaactttccccacaattctacatgcaaatgacaccaccaacaacacttaccatgt |
219 |
Q |
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| T |
4059170 |
gaaaatagacggttgcaaaaagaagtgcaagagttaagagcattgaaactttccccacaattctacatgcaaatgacaccaccaacaacacttaccatgt |
4059269 |
T |
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| Q |
220 |
gcccctcttgtgagcgtgtcgctgttccatcatctgccgttgatgctgccacgcgtcgtcatcctatggctccaaataaccctcgtacgtttcctgtggg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||| |
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| T |
4059270 |
gcccctcttgtgagcgtgtcgctgttccatcatctgccgttgatgctgccacgcgtcgtcatcctatggcttcaaatcaccctcgtacgttttccgtggg |
4059369 |
T |
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| Q |
320 |
accatgggccacagctgctcctatacaacataggacctttg |
360 |
Q |
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| T |
4059370 |
accatgggccacagctgctccaatccaacataggacctttg |
4059410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 41452104 - 41451905
Alignment:
| Q |
51 |
aggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggatgaaaatagacggttgcaaaaagaagtgcaag |
150 |
Q |
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| T |
41452104 |
aggacaaagctgaagcaaacagaggttgattgtgaagtgttgaaaaggtgctgtgaaaatctaacggaggagaataggagactacagaaggaagtacaag |
41452005 |
T |
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| Q |
151 |
agttaagagcattgaaactttccccacaattctacatgcaaatgacaccaccaacaacacttaccatgtgcccctcttgtgagcgtgtcgctgttccatc |
250 |
Q |
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| T |
41452004 |
agcttagagcactgaaactttccccacaattttacatgcaaatgacaccaccaactactcttactatgtgcccttcttgtgaacgtgtggctgttccatc |
41451905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 891119 - 891307
Alignment:
| Q |
50 |
caggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggatgaaaatagacggttgcaaaaagaagtgcaa |
149 |
Q |
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|||||| |||||||||||||| || || |||||||| | ||||| ||||| ||||||| |||||| ||||| ||||| |||||||||| ||||||||| |
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| T |
891119 |
caggaccaagttgaagcaaactgaagtggattgtgagtacttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaa |
891218 |
T |
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| Q |
150 |
gagttaagagcattgaaactttccccacaattctacatgcaaatgacaccaccaacaacacttaccatgtgcccctcttgtgagcgtgt |
238 |
Q |
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| T |
891219 |
gagcttagggcattgaagttatctccacaactctacatgcaaatgaatcctcccaccactctcacaatgtgcccttcgtgtgagcgtgt |
891307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 23336623 - 23336680
Alignment:
| Q |
51 |
aggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgaga |
108 |
Q |
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||||| ||||| ||||||||||| || |||||||| | |||||| ||||||||||||| |
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| T |
23336623 |
aggacaaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgaga |
23336680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 25901716 - 25901680
Alignment:
| Q |
51 |
aggactaagttgaagcaaacagaggtagattgtgaat |
87 |
Q |
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||||||||||||||||||||||| || |||||||||| |
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| T |
25901716 |
aggactaagttgaagcaaacagaagtggattgtgaat |
25901680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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