View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343_high_18 (Length: 277)
Name: NF5343_high_18
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 13394262 - 13394011
Alignment:
| Q |
11 |
caaaggaactaaaatatatatttgtcttaccaagttgcaatgaagaaaaaaccagccaaccatgttaaggatttagcagaaggagaatcaggatcccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394262 |
caaaggaactaaaatatatatttgtcttaccaagttgcaatgaagaaaaaaccagccaaccatgttaaggatttagcagaaggagaatcaggatcccaat |
13394163 |
T |
|
| Q |
111 |
taattaaagaaggtgatgatttactcactgctatcaacatgtaagtatgctccataaccaaagcaattgctagtccaacaaaagcagaagcagcacataa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394162 |
taattaaagaaggtgatgatttactcactgctatcaacatgtaagtatgctccataaccaaagcaattgctagtccaacaaaagcagaagcagcacataa |
13394063 |
T |
|
| Q |
211 |
caaaggcactttcccattactattgtatacacattcagatttagttcccttt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394062 |
caaaggcactttcccattactattgtatacacattcagatttagttcccttt |
13394011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 13397352 - 13397125
Alignment:
| Q |
26 |
atatatttgtcttaccaagttgcaatgaagaaaaaaccagccaaccatgttaaggatttagcagaaggagaatcaggatcccaattaattaaagaaggtg |
125 |
Q |
| |
|
|||| ||| ||||||||||||| |||| |||||||||||||||| || ||||||| || |||||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
13397352 |
atatgtttctcttaccaagttgtaatgtagaaaaaaccagccaaggatattaaggacttgacagaagaagaatcattatcccaatcaagtaaagaaggtg |
13397253 |
T |
|
| Q |
126 |
atgatttactcactgctatcaacatgtaagtatgctccataaccaaagcaattgctagtccaacaaaagcagaagcagcacataacaaaggcactttccc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| ||||| |||||| ||||| || |
|
|
| T |
13397252 |
gtgatttactcactgctatcaacatgtaaatatgctccataaccaaggcaattgctagtccaacaaaggcacaagcagaacatagcaaaggtactttacc |
13397153 |
T |
|
| Q |
226 |
attactattgtatacacattcagattta |
253 |
Q |
| |
|
|||| |||||| |||||||| ||||| |
|
|
| T |
13397152 |
gttaccattgtaagcacattcatattta |
13397125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University