View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_20 (Length: 267)
Name: NF5343_high_20
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 42844048 - 42844296
Alignment:
| Q |
16 |
atcacaaccgcatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42844048 |
atcacaaccgcatccctcttctctatcagctaccaacacattttctctcaacagtagtatgttctaacaacactccaacttcaccactcttatcaaccat |
42844147 |
T |
|
| Q |
116 |
ttcatcccaaacagtaaac------------tctcattcccaaatcttgattttgcagtaaccagtaataattggttgattttaaagttgggcaattgaa |
203 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
42844148 |
ttcatcccaaacagtaaactctcataacatatctcattccaaaatcttgattttgcagtaaacagcaataattggttgattttaaagttgggcaattgaa |
42844247 |
T |
|
| Q |
204 |
aactctattttacattcaagatttcatcatagaaattcatcaatctctt |
252 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42844248 |
aactctattttacattcatgatttcatcatagaaattcatcaatctctt |
42844296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 46097980 - 46097929
Alignment:
| Q |
170 |
aataattggttgattttaaagttgggcaattgaaaactctattttacattca |
221 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46097980 |
aataattggttgattttaaagttgggcaactgaaaactctattttacattca |
46097929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 46098092 - 46098047
Alignment:
| Q |
95 |
ttcaccactcttatcaaccatttcatcccaaacagtaaactctcat |
140 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46098092 |
ttcatcactcttatcaaccatttcatcccaaacagtaaactctcat |
46098047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 5929354 - 5929602
Alignment:
| Q |
16 |
atcacaaccgcatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccat |
115 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5929354 |
atcacagccacatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaacttcaccactcttatcaaccat |
5929453 |
T |
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| Q |
116 |
ttcatcccaaacagtaaac------------tctcattcccaaatcttgattttgcagtaaccagtaataattggttgattttaaagttgggcaattgaa |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
5929454 |
ttcatcccaaacagtaaactctcataacacatctcattccaaaatcttgattttgcagtaaacatcaataattggttgattttaaagttgggcaattgaa |
5929553 |
T |
|
| Q |
204 |
aactctattttacattcaagatttcatcatagaaattcatcaatctctt |
252 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
5929554 |
aactctatttttcattcatgatttcatcatagaaattcatcaatctctt |
5929602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 9124282 - 9124034
Alignment:
| Q |
16 |
atcacaaccgcatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccat |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
9124282 |
atcacaaccgcatccctcttctctattagctaccaacacattttctctcaacaacattatgttctaacaacagtccaacttcaccactcttatcaaccat |
9124183 |
T |
|
| Q |
116 |
ttcatcccaaacagtaaac------------tctcattcccaaatcttgattttgcagtaaccagtaataattggttgattttaaagttgggcaattgaa |
203 |
Q |
| |
|
||||||||||||||||||| || |||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
9124182 |
ttcatcccaaacagtaaacgctcataacacatcccattccaaaatcttgattttgcagtaaacaacaataattggttgattttaaagttgggcaattgaa |
9124083 |
T |
|
| Q |
204 |
aactctattttacattcaagatttcatcatagaaattcatcaatctctt |
252 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
9124082 |
aactctattttacattcatgatttcatcatagaaattcatcaatctctt |
9124034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 2601114 - 2600994
Alignment:
| Q |
16 |
atcacaaccgcatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccat |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
2601114 |
atcacaaccacatccctcttctctatcagctaccaacacattttctctcaacagcagtatgttttaacaacactccaacttcaccactcttatcatccat |
2601015 |
T |
|
| Q |
116 |
ttcatcccaaacagtaaactc |
136 |
Q |
| |
|
||||||||||||| ||||||| |
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| T |
2601014 |
ttcatcccaaacaataaactc |
2600994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 2600923 - 2600841
Alignment:
| Q |
170 |
aataattggttgattttaaagttgggcaattgaaaactctattttacattcaagatttcatcatagaaattcatcaatctctt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
2600923 |
aataattggttgattttaaagttgggcaattgaaaactctattttacattcatgatttcatcatggaaattcatcaatctctt |
2600841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 20368986 - 20368935
Alignment:
| Q |
89 |
tccaatttcaccactcttatcaaccatttcatcccaaacagtaaactctcat |
140 |
Q |
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||||| ||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
20368986 |
tccaacttcaccactctaatcaaccacttcatcccaaacagcaaactctcat |
20368935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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