View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_21 (Length: 259)
Name: NF5343_high_21
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2323771 - 2324001
Alignment:
| Q |
1 |
aacaaagagacttgattaagatggattaaaaaac-atgcaattggacatgaaaaccctttatgctatagctagtggattctattaacaaatacaatttgg |
99 |
Q |
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| T |
2323771 |
aacaaagagacttgattaagatggattaaaaaactatgcaattggacatgaaaaccctttatgctatagctagtggattctattaacaaatacaat---- |
2323866 |
T |
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| Q |
100 |
ttcaattggttgtatttcgctcgccatctttaagaaatttttctagctcgagcgaaaattaaaagcataaaaaatggatgtttggattcactattttaca |
199 |
Q |
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| T |
2323867 |
------tggttgtatttcgctcgccacctttaagaaatttttctagctcgagcgaaaattaaaagcataaaaaatgaatgtttggattcactattttaca |
2323960 |
T |
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| Q |
200 |
actttgaataattttcacctatacacatttttgtagctttt |
240 |
Q |
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| T |
2323961 |
actttgaataattttcacctatacacatttttgtagctttt |
2324001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 2344858 - 2344895
Alignment:
| Q |
73 |
tggattctattaacaaatacaatttggttcaattggtt |
110 |
Q |
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| T |
2344858 |
tggattctattaacaaatacaatttggttcaattggtt |
2344895 |
T |
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