View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_22 (Length: 252)
Name: NF5343_high_22
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 29085575 - 29085374
Alignment:
| Q |
11 |
aagaatatcaatacccaactcataataatgaagtagcttatgagaaaatcaattcccaactcagaaagtaaatcaatacccacctcacaaagtgatcagc |
110 |
Q |
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| T |
29085575 |
aagaaaatcaatacccaactcataataatgaagtagcttatgagaaaatcaatttccaactcagaaagtaaatcaatacccacctcacaaagtaatcagc |
29085476 |
T |
|
| Q |
111 |
acctaactccaatcatggaattcttgacgtgaatagctcttcctcc--atttgtgggaaaggtaatcaaatttttcctttaacgttgtctctccacaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29085475 |
acctaactccaatcatggaattcttgacgtgaatagctcttcctccatatttgtgggaaaggtaatcaaatttttcctttaacattgtctctccacaatt |
29085376 |
T |
|
| Q |
209 |
at |
210 |
Q |
| |
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|| |
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|
| T |
29085375 |
at |
29085374 |
T |
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