View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_3 (Length: 672)
Name: NF5343_high_3
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 41 - 659
Target Start/End: Complemental strand, 40187450 - 40186832
Alignment:
| Q |
41 |
gtgttgatgtctatagacccggtgggtgaagatatcttatattttaagatagatatagccttgtagcattaagttcattaagttgtctagtggcatggta |
140 |
Q |
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| T |
40187450 |
gtgttgatgtctgtagacccagtgggtgaagatatcttatattttaagatagatatagcattgtagcattaagttcattaagttgtctagtggcatggta |
40187351 |
T |
|
| Q |
141 |
tcgtccaaactttgtgcatgattagttggattttccttatgtgtgtggatattctcattaatgtatcatgaaatatcgacgtcctcgttaattgattcca |
240 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
40187350 |
tcgtccaaactttgtgcataattagttggattttccttatgtgtgtgggtattctcattaatgtatcctgaaatatttacgtcctcgttaattgattcca |
40187251 |
T |
|
| Q |
241 |
taatatcaatgtcctcattaattgattccataatacggaagtatctgtttgtcttggtaatgttacannnnnnnnctaccgccacgccgcccttttcacc |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
40187250 |
taatatcaatgtcctcattaattgattccataatacggaagtatatgttcgtcttggtaatgttacattttttttctaccgccacgccgccctttccacc |
40187151 |
T |
|
| Q |
341 |
gccatcattcaatctatgccgcctcttaggcttttacacgagcgcccgcagtcctttcactttcttcccaccatcattattcatctagctgtctctcatt |
440 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40187150 |
gccatcattcaatctatgctgcctcttaggcttttacacgagcgcccgcagtcctttcactttcttcccaccatcattattcatctagttgtctctcatt |
40187051 |
T |
|
| Q |
441 |
cttcatggacaatttgttcatcatgtagcacattatttgcaacaatacannnnnnncttcttcgggtttccaacatagtgaccaaatgtaccacatgtaa |
540 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187050 |
cttcatggacaatttgttcatcatgtagcacattatttgcaacaatacatttttttcttcttcgggtttccaacatagtgaccaaatgtaccacatgtaa |
40186951 |
T |
|
| Q |
541 |
atcacaacatatggaatcattcatacctcactttataaacatgtaccttcaattcaaacatggccaaaaataacttgttaaactcaacttcagcactcaa |
640 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40186950 |
atcacagcatatggaatcattcatacctcgctttataaacatgtaccttcaattcaaacatggccaaaaatgacttgttaaactcaacttcagcactcaa |
40186851 |
T |
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| Q |
641 |
cctgcataattttcccttt |
659 |
Q |
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| T |
40186850 |
cctgcataattttcccttt |
40186832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 40187493 - 40187452
Alignment:
| Q |
36 |
ctatggtgttgatgtctatagacccggtgggtgaagatatct |
77 |
Q |
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| T |
40187493 |
ctatggtgttgatgtccatagacccgctgggttaagatatct |
40187452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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