View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_31 (Length: 231)
Name: NF5343_high_31
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 2516225 - 2516424
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516225 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
2516324 |
T |
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| Q |
119 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccacacacaggt |
218 |
Q |
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| T |
2516325 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgtgacaccttcaggttgagtaagattatactgtgagatcattccacacacaggt |
2516424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 2511954 - 2512153
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
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||||||||||||||||||||||||||||| | |||||||| |||||||||||||| || |||||||| |||| ||||||||||| |||| | ||||| |
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| T |
2511954 |
cctcagctatgtcttccacatacacaaccttcccttctctgatatgaggcaggacgaagtctaagaacttggcatatagatgatagtaatcaactacgac |
2512053 |
T |
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| Q |
119 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccacacacaggt |
218 |
Q |
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| T |
2512054 |
aaaaccttgcaaacgaatccgcttatatatgatatgtgccaaatttgttacaccttcaggttgagtaagattgtactgtgagatcattccacacacaggt |
2512153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 2505333 - 2505532
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
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|||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| |||||| | |
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| T |
2505333 |
cctcagctatgtcttctacatacacaaccttcccttctctgatatgaggcaggacaaactccaagaattttccgtatagatgatagtaatcagctacaat |
2505432 |
T |
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| Q |
119 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccacacacaggt |
218 |
Q |
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|||||||||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2505433 |
aaaaccttgcaaacggacccgcttatatacgatatgtgccaaatttgtcacaccttcaggttgagtaagattgtactgtgagatcattccacacacaggt |
2505532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 2429787 - 2429588
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
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|
||||||||||||||||||||||||||||| | |||||||||||| ||||||| | |||||| |||||||| || || |||||||| || | | ||| | |
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| T |
2429787 |
cctcagctatgtcttccacatacacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgatagtattcaaatacagc |
2429688 |
T |
|
| Q |
119 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccacacacaggt |
218 |
Q |
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||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2429687 |
aaaaccttccatccggatccgcttatatatgatatgtgccaaatttgtgacaccttcaggttgagtaagattgtactgtgagatcattccacacacaggt |
2429588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 2436130 - 2435939
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
| |
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||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||| || || || ||| | |||| || || |
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| T |
2436130 |
cctcagctatgtcttccacatacacaacctttccttctcttataagaggcaggacaaactccaagaattttgtataaaggtgaaagtaatcagatataac |
2436031 |
T |
|
| Q |
119 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccac |
210 |
Q |
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||||| | || |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2436030 |
aaaaccctcgatccgaatccgcttatatatgatttgtgccaaatttgtgacaccttcaggttgagtaagattgtactgtgagatcattccac |
2435939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 2432769 - 2432578
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||| || |||||||| || || || ||| | |||| || || |
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| T |
2432769 |
cctcagctatgtcttccacatacacaatctttccttctcttataagaggcaggacaaattccaagaattttgtataaaggtgaaagtaatcagatataac |
2432670 |
T |
|
| Q |
119 |
gaaaccttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccac |
210 |
Q |
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||||| | | |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2432669 |
aaaaccctcgaaccgaatccgcttatatatgatttgtgccaaatttgtgacaccttcaggttgagtgagattatactgtgagatcattccac |
2432578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 2496652 - 2496844
Alignment:
| Q |
19 |
cctcagctatgtcttccacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataattagctacggt |
118 |
Q |
| |
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|||||| ||||||||| |||||||||| | | || ||||| |||||||| ||||||||||| || ||||| | | ||| ||| | ||| ||| || || |
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| T |
2496652 |
cctcagttatgtcttcaacatacacaatcttcccatctctgatatgagggaggacaaactccaacaatttaggatttaggtgaaagaaatcagc-actgt |
2496750 |
T |
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| Q |
119 |
gaaacc-ttgcatacgaatccgcttatatatgatatgtgccaaatttgcgacaccttcaggttgagtaagattatactgtgagatcattccaca |
211 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
2496751 |
taaacccttccatgcgaatccgcttatatatgatatgtgccaaattcgttacagcttcaggttgcgtaagattgtactgtgagatcattccaca |
2496844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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