View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_5 (Length: 558)
Name: NF5343_high_5
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 52446111 - 52445741
Alignment:
| Q |
17 |
cagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaaca |
116 |
Q |
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| T |
52446111 |
cagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaaca |
52446012 |
T |
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| Q |
117 |
taactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatca |
216 |
Q |
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| T |
52446011 |
caactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatca |
52445920 |
T |
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| Q |
217 |
tacgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactca |
316 |
Q |
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| T |
52445919 |
tacgtgtcagggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactca |
52445820 |
T |
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| Q |
317 |
atagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
395 |
Q |
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| T |
52445819 |
atagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 393 - 542
Target Start/End: Complemental strand, 52445451 - 52445300
Alignment:
| Q |
393 |
atctccgatggaggtccttaccattgctggtggattgctccaa--gtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
490 |
Q |
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| T |
52445451 |
atctccgacggaggtccttaccattgctggtggattgctccaacagtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
52445352 |
T |
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| Q |
491 |
atcatgtgtctgaaaatatcgttctcgtggacaaatttaagtatgttagaaa |
542 |
Q |
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| T |
52445351 |
attatgtgtccgaagatctcgttctcgtggacaaatttaagtatgttagaaa |
52445300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 36 - 344
Target Start/End: Complemental strand, 52447031 - 52446722
Alignment:
| Q |
36 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
135 |
Q |
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| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
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| Q |
136 |
tgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtca |
225 |
Q |
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| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatca |
52446841 |
T |
|
| Q |
226 |
cggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgt |
325 |
Q |
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||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||| || |||| ||||| |
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| T |
52446840 |
aggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgt |
52446741 |
T |
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| Q |
326 |
aagaagaaattaaacatat |
344 |
Q |
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| ||| ||||||||||||| |
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| T |
52446740 |
atgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 261 - 390
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
261 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
360 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
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| Q |
361 |
gataaggtgtgtataaatatgtctttaatt |
390 |
Q |
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| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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