View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_8 (Length: 526)
Name: NF5343_high_8
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 1960502 - 1960075
Alignment:
| Q |
11 |
atcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgtt |
110 |
Q |
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| T |
1960502 |
atcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgtt |
1960403 |
T |
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| Q |
111 |
agtaatgtaaaaatatcagaaaacatgaaaacagtgatttattatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagt |
210 |
Q |
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| T |
1960402 |
agtaatgtaaaaatatcagaaaacatgaaaacagtgatttgttatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagt |
1960303 |
T |
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| Q |
211 |
taagaataatatcaaaccaacctgatatttcttaatagcttgttgttcgtcctcaatcatctttgattcctgctcaagcttccgagcaatgtaatccttt |
310 |
Q |
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| T |
1960302 |
taagaataatatcaaaccaacctga-------taata--ttctt-atcgtcctcaatcatctttgattcctgctcaagcttccgagcaatgtaatccttt |
1960213 |
T |
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| Q |
311 |
atcacagaaaatgtgaggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatgcaattcaaaacttctttta |
410 |
Q |
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| T |
1960212 |
atcacagaaaatgtgaggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatgcaattcaaaacttctttta |
1960113 |
T |
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| Q |
411 |
cttctttggagcaatcttatccaagcacaccaaaatat |
448 |
Q |
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| T |
1960112 |
cttctttggagcaatcttatcaaagcacaccaaaatat |
1960075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 511
Target Start/End: Complemental strand, 1960076 - 1960034
Alignment:
| Q |
469 |
atagatcccctcctttaacagaatcaccatcttttgcaacatg |
511 |
Q |
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| T |
1960076 |
atagatccccgcctttaacagaatcaccatcttttgcaacatg |
1960034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 227 - 496
Target Start/End: Complemental strand, 5897001 - 5896730
Alignment:
| Q |
227 |
ccaacctgatatttcttaatagcttgttgttcgtcctcaatcatctttgattcctgctcaagcttccgagcaatgtaatcctttatcacagaaaatgtga |
326 |
Q |
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| T |
5897001 |
ccaacctgatatttctcaatagcttgtcggtcctcctcaatcacctttgattcctgctcaagcttccgagcaatgtaatccttgatcactgaaagtgtga |
5896902 |
T |
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| Q |
327 |
ggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatgcaattcaaaacttcttttacttctttggagcaatc |
426 |
Q |
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||||||| || ||||||||||||||||||| ||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
5896901 |
ggcaagggttttttgacagagtttgaaggacaattatggggggtaaaatattatccctttcaatgtaattcaaaacttcttttacttctttggagcaatc |
5896802 |
T |
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| Q |
427 |
ttatccaagcacaccaaaatatttgagtacatcagctc--agagatagatcccctcctttaacagaatcacc |
496 |
Q |
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|| ||||||| |||||||||||||||||||||| || | |||||| |||||||||||||||| |||||||| |
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| T |
5896801 |
ttctccaagctcaccaaaatatttgagtacatccgcccaaagagatggatcccctcctttaactgaatcacc |
5896730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 5897205 - 5897143
Alignment:
| Q |
35 |
ttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttt |
97 |
Q |
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| T |
5897205 |
ttcataactaaaccatagtcttatccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
182 |
agacaaatacataagttatcaaataaagttaaga |
215 |
Q |
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| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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