View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_high_9 (Length: 416)
Name: NF5343_high_9
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 5304283 - 5303884
Alignment:
| Q |
1 |
gtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggtatccaaattaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5304283 |
gtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggtatccaaattagtt |
5304184 |
T |
|
| Q |
101 |
aaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgtgaatgactactactgcagaatggagaatttgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304183 |
aaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgtgaatgactactactgcagaatggagaatttgagt |
5304084 |
T |
|
| Q |
201 |
attagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaagggaaggaattttatattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304083 |
attagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaagggaaggaattttatattg |
5303984 |
T |
|
| Q |
301 |
gtcctcatcatcatagttcccattctgcagtggtcatttctgttgtagcacataaaactcatatgcttcgtggaactttctttttggttggatcatgttg |
400 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303983 |
gtcctcatcatcatagttcccattctgcaggggttatttctgttgtagcacataaaactcatatgcttcgtggaactttctttttggttggatcatgttg |
5303884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 29224580 - 29224286
Alignment:
| Q |
1 |
gtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggtatccaaattaatt |
100 |
Q |
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|||| ||||||||| ||||||||||| | ||||||||||||||||||||||| || | || ||||| ||||||||||||||||||||| || ||||| |
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| T |
29224580 |
gtcttcgagacacaactgctacttattccgtcaactttctcaacttggttcctatattgacattcttaacttctatcatatgcaggtatataatctaatt |
29224481 |
T |
|
| Q |
101 |
aaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgtgaatgactactactgcagaatggagaatttgagt |
200 |
Q |
| |
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|| |||| ||||||||| ||||||| || ||| ||| ||||||||| || |||| | | | ||||||||||||||||||| |
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| T |
29224480 |
taa-----------tttaactacataaataaattaatcttccaaata--------tataaatttttggatgagtgcaattgcagaatggagaatttgaag |
29224400 |
T |
|
| Q |
201 |
attagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaagggaaggaattttatattg |
300 |
Q |
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||| ||||||||| ||||||||| ||| |||| || || ||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
29224399 |
attggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaaggaattttatattg |
29224300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 177 - 397
Target Start/End: Original strand, 29147264 - 29147490
Alignment:
| Q |
177 |
tactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtcttt |
276 |
Q |
| |
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|||| ||||||||||||||||| ||| ||||||||| ||||||||| ||| |||| || || ||| |||||||||||||||||||||| || ||||||| |
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| T |
29147264 |
tactacagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtcttt |
29147363 |
T |
|
| Q |
277 |
acaaagggaaggaattttatattgg------tcctcatcatcatagttcccattctgcagtggtcatttctgttgtagcacataaaactcatatgcttcg |
370 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| ||||||||| | | | | | |||||| |||||| ||||||| ||| |||| |
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| T |
29147364 |
acaaagggaaggaattttatattggtcatcatcatcatcatcatagtcaccattctgctgagattagtgctgttgcagcacacaaaactcgcatgtttcg |
29147463 |
T |
|
| Q |
371 |
tggaactttctttttggttggatcatg |
397 |
Q |
| |
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||| |||||||||||||||||| |||| |
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| T |
29147464 |
tggcactttctttttggttggagcatg |
29147490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 300
Target Start/End: Complemental strand, 38852015 - 38851889
Alignment:
| Q |
174 |
tactactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtc |
273 |
Q |
| |
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||||| ||||||||||||||||||| ||| |||||| ||||||||||||| || | ||||||||||||||||||| |||| |||||||| |||| | |
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| T |
38852015 |
tactattgcagaatggagaatttgaacattcacacatggaatggtagagctaagtgtgtcggggcaattttgtgtgttgctggaacattagctgcaagac |
38851916 |
T |
|
| Q |
274 |
tttacaaagggaaggaattttatattg |
300 |
Q |
| |
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| |||||||| ||||| ||||| |||| |
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| T |
38851915 |
tatacaaaggaaaggagttttacattg |
38851889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 29147075 - 29147201
Alignment:
| Q |
1 |
gtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggtatccaaattaatt |
100 |
Q |
| |
|
|||| ||||||||| ||||| ||||| | ||||| |||||||||||||| || |||||||| ||||| || ||||| |||| |||||||| |||||| || |
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| T |
29147075 |
gtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattcttaacctctataatattcaggtatctaaattactt |
29147174 |
T |
|
| Q |
101 |
aaagacacattaaatttagctacataa |
127 |
Q |
| |
|
|||| | ||| ||||||| ||||||| |
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| T |
29147175 |
taagataaatttaatttagttacataa |
29147201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 29224248 - 29224191
Alignment:
| Q |
340 |
ctgttgtagcacataaaactcatatgcttcgtggaactttctttttggttggatcatg |
397 |
Q |
| |
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|||||| |||||| |||||||| ||| ||||||| |||||||||||||||||| |||| |
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| T |
29224248 |
ctgttgcagcacacaaaactcacatgtttcgtggcactttctttttggttggagcatg |
29224191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 38852161 - 38852097
Alignment:
| Q |
6 |
cgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgac |
70 |
Q |
| |
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|||||||||||||| || |||||| |||| ||||||||||| |||| || ||||| |||||||| |
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| T |
38852161 |
cgagacacatctgccacatatgctctcaattttctcaacttaattcctatctgcacattcttgac |
38852097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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