View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343_low_11 (Length: 412)
Name: NF5343_low_11
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 29085256 - 29084873
Alignment:
| Q |
11 |
aagagatctcttacaatcacatctaatcggtcttgagttcttcatatttacttaatcaaaaaataataataccactcgcactaaccaccttccaaaaatc |
110 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29085256 |
aagagatctcttaccatcacatctaattgatcttgagttctccatatttactctttcaaacaataataataccactcacactaaccaccttccaaaaatc |
29085157 |
T |
|
| Q |
111 |
caactcaatcaacatgtgtaaagtagcactaactgaaattgtggaagaaatttttcaaagcagagcaattattaaacctaaaagaggaagaaataattga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29085156 |
caactcaatcaacatgtgtaaagtagcactaactgaaatagtggaagaaatttttcaaagcagagcaattattaaacctaaaagaggaagaaataattga |
29085057 |
T |
|
| Q |
211 |
cacaacagtagcctttggacccaataatcaatagctcttattttctctttctttatatactgctacttgaagaacaaaaggagggtgtggaaaacaaatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29085056 |
cacaacagtagcctttggacccaataatcaatagctcttattttatctttctttatatactgctacttgaagaacaaaaagagggtgtggaaaacaaatg |
29084957 |
T |
|
| Q |
311 |
agagatataattgttctagagatagaaaatagt----gaagaagagtgtgcaggaagttgatgcaatctcaccaccaatatcac |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29084956 |
agagatataattgttctagagatagaaaatagtgaaggaagaagagtgtgcaagaagttgatgcaatctcaccaccaatatcac |
29084873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 29090890 - 29090824
Alignment:
| Q |
99 |
cttccaaaaatccaactcaatca-acatgtgtaaagtagcactaactgaaattgtggaagaaattttt |
165 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| |||| || |||||||||||||| || ||||| |
|
|
| T |
29090890 |
cttccaaaaatccaactca-tcatacatgtgtaaagcagcagtagctgaaattgtggaacaatttttt |
29090824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University