View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343_low_14 (Length: 393)
Name: NF5343_low_14
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 34478638 - 34478260
Alignment:
| Q |
19 |
gtgtaagtccacagggttacactatggcaatgtatatgttgtgaatagaaatgatctaaatgtaaattttctcataatagggaaactgagataggatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34478638 |
gtgtaagtccacagggttacactatggcaatgtatatgttgtgaatagaaatgatctaaatgtaaattttctcataatagggaaactgagataggatatt |
34478539 |
T |
|
| Q |
119 |
tttattgatcaagaacaatattgaatgagattcaaattgatgaacaagtgtttaatagatttgttctagatcgtatcaaacaaattgaga---------- |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34478538 |
tttattgatcaagaacaatattgaatgagattcaaattgatgaacaagtgtttaatagatttgttctagatcgtatctaacaaattgagatcccaagagg |
34478439 |
T |
|
| Q |
209 |
---tatggttcctaaacttacaaggtttattggcgaaactggatattcaaccaatgaaaatatttccagatatatactacaaatttgggagaacttgttc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34478438 |
gactatggttcctaaacttacaaggtttattggcgatactggatattcaaccaatgaaaatatttccagatatatactacaaatttgggagaacttgttc |
34478339 |
T |
|
| Q |
306 |
at-----aggattgaaaatagaatgtttacccagttcattgacaaagaatgctttcacttggttttcaatgttaaaact |
379 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34478338 |
atgatgaaggattgaaaatagaatgtttccccagttcattgacaaagaatgctttcacttggttttcaatgttaaaact |
34478260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University