View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_15 (Length: 383)
Name: NF5343_low_15
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 34409737 - 34410091
Alignment:
| Q |
18 |
acaaggctcatagccttccagatggtatgttcaacttcatgctagcaatgggagaagtagcattttcttatgcaggtcacaatgtagttctcgaaatcca |
117 |
Q |
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| T |
34409737 |
acaaggctcatagccttccagatggtatgttcaacttcatgctagcaatgggagaagtagcattttcttatgcaggtcacaatgtagttctcgaaatcca |
34409836 |
T |
|
| Q |
118 |
agcaacaataccttctactcctgagcagccttccaagatagcaatgtggaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagtt |
217 |
Q |
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| T |
34409837 |
agcaacaataccttctactcctgaccagccttccaagatagcaatgtggaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagtt |
34409936 |
T |
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| Q |
218 |
gcatttgttggatactatatattcggaaacaccgttgatgataatattttaatcacactacaacgccctacttggctcattgttactgctaacatctttg |
317 |
Q |
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| T |
34409937 |
gcatttgttggatactatatattcggaaacaccgttgatgataatattttaatcacactacaacgccctacttggctcattgttactgctaacatctttg |
34410036 |
T |
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| Q |
318 |
ttattgttcatgttattggtggctatcaggtgattatttcaactttttaattcat |
372 |
Q |
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| T |
34410037 |
ttattgttcatgttattggtggctatcaggtgattatttcaactttttaattcat |
34410091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 38826878 - 38826645
Alignment:
| Q |
66 |
tgggagaagtagcattttcttatgcaggtcacaatgtagttctcgaaatccaagcaacaataccttctactcctgagcagccttccaagatagcaatgtg |
165 |
Q |
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| T |
38826878 |
tgggagatgtagcatttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatgccatcaaccccagagaatccttctaagaaacccatgtg |
38826779 |
T |
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| Q |
166 |
gaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagttgcatttgttggatactatatattcggaaacaccgttgatgataatatt |
265 |
Q |
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||||||||| || ||||||| ||||||| || | |||||| | || ||||| ||| ||||||||||||| ||||||||| | ||||||||||| || |
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| T |
38826778 |
gaaaggagttatttttgcatacataggagttgcattctgctacttccctgttgcctttattggatactatatgttcggaaactcagttgatgataacatc |
38826679 |
T |
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| Q |
266 |
ttaatcacactacaacgccctacttggctcattg |
299 |
Q |
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| T |
38826678 |
ctcatcacgctagagcatcctacttggctcattg |
38826645 |
T |
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