View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_16 (Length: 380)
Name: NF5343_low_16
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 37305338 - 37304989
Alignment:
| Q |
10 |
aagaatataccctcctccttatcagtttccactgatttggtggcttccacctcaaatgtggactcaaattccacaattgttggcaacagtttagagctat |
109 |
Q |
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| T |
37305338 |
aagaaaataccctcctccttatcagtttccactgatttggtggcttccacctcaaatgtggactcaaattccacaattgttggcaacagtttagagctat |
37305239 |
T |
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| Q |
110 |
tgtcttgctcacaatcactagcatgtggttgaagaagagaactcatgataatatgtatgttcaatgtgtttggtctatttagtacttactatataaaata |
209 |
Q |
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| T |
37305238 |
tgtcttgctcacaatcactagcatgtggttgaagaagagaactcatgataatatgtatgttcaatgtgtttggtctatttagtacttactatataaaata |
37305139 |
T |
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| Q |
210 |
tattttgtgtaatatatagtaagtgttaaattaatttaaagcaaggtagaatacaaaacagaacatatgccacttgagcaaactttgtgatagacaacat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37305138 |
tattttgtgtaatatatagtaagtgttaaattaatttaaagcaaggtagaatacaaaacagaacatatgccacttgagcaaactttgtgatagacaacat |
37305039 |
T |
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| Q |
310 |
gaaaaatgaaatcaacagaagttttacagtgaagtgtgattgtgtacact |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37305038 |
gaaaaatgaaatcaacagaagttttacagtgaagtgtgattgtgtacact |
37304989 |
T |
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