View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_18 (Length: 323)
Name: NF5343_low_18
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 55896947 - 55896662
Alignment:
| Q |
13 |
aatatcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaaaactactgaaaactttatatgctttttagtatcaaacaactagt |
112 |
Q |
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| T |
55896947 |
aatatcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaaaactactgaaaactttatatgctttttagtag------actaac |
55896854 |
T |
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| Q |
113 |
gttatgacacgt-tcaaattaattttattttatgattagtggtactattttatcttaaaattttattaatcaagggtttatttgctaataattcaaaaat |
211 |
Q |
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| T |
55896853 |
ataataaaacttatcaaattaattttattttatgattagtggtactattttatcttaaaattttattaatcaagggtttatttgctaataattcaaaaat |
55896754 |
T |
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| Q |
212 |
tgtatgatattcttccttctcttacctcttcttccgccctcctcattccacatcaacaaccaaacctcaccaactctttatataaataaacaaat |
306 |
Q |
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| T |
55896753 |
tgtatgatattgttccttctcttacctcttcttccgc---cctcattccacatcaacaaccaaacctcaccaactctttatataaataaacaaat |
55896662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 1028230 - 1028360
Alignment:
| Q |
98 |
tatcaaacaactagtg-ttatgacacgttcaaattaattttattttatgattagtggtactattttatcttaaaattttattaatcaagggtttatttgc |
196 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028230 |
tatcaaacaaccagtggttatgacacgttcaaattaattttattttatgattaatggtactattttatcttaaaattttattaatcaagggtttatttgc |
1028329 |
T |
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| Q |
197 |
taataattcaaaaattgtatgatattcttcc |
227 |
Q |
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| T |
1028330 |
taataattcaaaaattgtatgatattcttcc |
1028360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 1028095 - 1028150
Alignment:
| Q |
13 |
aatatcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaa |
68 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028095 |
aatagcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaa |
1028150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 1028369 - 1028421
Alignment:
| Q |
254 |
tcattccacatcaacaaccaaacctcaccaactctttatataaataaacaaat |
306 |
Q |
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| T |
1028369 |
tcattccacatcaacaaccaaaccccaccaactctttaaataaataaacaaat |
1028421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 1028177 - 1028207
Alignment:
| Q |
64 |
taaaaaactactgaaaactttatatgctttt |
94 |
Q |
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| T |
1028177 |
taaaaaactactgaaaactttatatgctttt |
1028207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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