View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_19 (Length: 316)
Name: NF5343_low_19
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_19 |
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| [»] scaffold0528 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 31071510 - 31071796
Alignment:
| Q |
20 |
aaatataacataacttgaaaaacaaagatcaaacacatttaatcctcttcttagcaacaaggcagagaggatttttcttgtgttgaacaagtcctggaag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31071510 |
aaatataacataacttgaaaaacaaagatcaaacacattcaatcctcttcttagcaataaggcagagaggatttttcttgtgttgaacaagtcctggaag |
31071609 |
T |
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| Q |
120 |
accatcaatgtctatattttcccactttactccttcaggcatttcccaatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgcc |
219 |
Q |
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| T |
31071610 |
accatcaatgtctatattttcccactttactccttcaggcatttcccaatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgcc |
31071709 |
T |
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| Q |
220 |
atgtttaagccggggcaaactcttcgccccgagccaaatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatg |
306 |
Q |
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| T |
31071710 |
atgtttaagccggggcaaactcttcgccccgagccaaatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatg |
31071796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 306
Target Start/End: Original strand, 31052702 - 31052964
Alignment:
| Q |
44 |
aagatcaaacacatttaatcctcttcttagcaacaaggcagagaggatttttcttgtgttgaacaagtcctggaagaccatcaatgtctatattttccca |
143 |
Q |
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| T |
31052702 |
aagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccct |
31052801 |
T |
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| Q |
144 |
ctttactccttcaggcatttcccaatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgccatgtttaagccggggcaaactctt |
243 |
Q |
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| T |
31052802 |
cttagctccttcaggcatttcccaatcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattctt |
31052901 |
T |
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| Q |
244 |
cgccccgagccaaatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatg |
306 |
Q |
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| T |
31052902 |
cgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
31052964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 44 - 306
Target Start/End: Original strand, 31039212 - 31039474
Alignment:
| Q |
44 |
aagatcaaacacatttaatcctcttcttagcaacaaggcagagaggatttttcttgtgttgaacaagtcctggaagaccatcaatgtctatattttccca |
143 |
Q |
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| T |
31039212 |
aagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccct |
31039311 |
T |
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| Q |
144 |
ctttactccttcaggcatttcccaatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgccatgtttaagccggggcaaactctt |
243 |
Q |
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| T |
31039312 |
cttagctccttcaggcatttcccagtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattctt |
31039411 |
T |
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| Q |
244 |
cgccccgagccaaatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatg |
306 |
Q |
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| T |
31039412 |
cgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
31039474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 44 - 248
Target Start/End: Original strand, 31048435 - 31048639
Alignment:
| Q |
44 |
aagatcaaacacatttaatcctcttcttagcaacaaggcagagaggatttttcttgtgttgaacaagtcctggaagaccatcaatgtctatattttccca |
143 |
Q |
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| T |
31048435 |
aagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccct |
31048534 |
T |
|
| Q |
144 |
ctttactccttcaggcatttcccaatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgccatgtttaagccggggcaaactctt |
243 |
Q |
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||| ||||||||||||||||||| ||||| || |||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||| |||| |
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| T |
31048535 |
cttagctccttcaggcatttcccagtcaaatgaacagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattctt |
31048634 |
T |
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| Q |
244 |
cgccc |
248 |
Q |
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| T |
31048635 |
cgccc |
31048639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 124 - 1
Alignment:
| Q |
44 |
aagatcaaacacatttaatcctcttcttagcaacaaggcagagaggatttttcttgtgttgaacaagtcctggaagaccatcaatgtctatattttccca |
143 |
Q |
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||||||| || |||| ||| | ||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||| | |||| || | ||||| |
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| T |
124 |
aagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccct |
25 |
T |
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| Q |
144 |
ctttactccttcaggcatttccca |
167 |
Q |
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||| ||||||||||||||||||| |
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| T |
24 |
cttagctccttcaggcatttccca |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 9031183 - 9031146
Alignment:
| Q |
68 |
tcttagcaacaaggcagagaggatttttcttgtgttga |
105 |
Q |
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|||||||||||||||| |||||||| |||||||||||| |
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| T |
9031183 |
tcttagcaacaaggcaaagaggattcttcttgtgttga |
9031146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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