View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343_low_2 (Length: 679)
Name: NF5343_low_2
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 52446231 - 52445741
Alignment:
| Q |
18 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
117 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52446231 |
cacaaagcaatacaacacaaacacaaagtgaatccgaaagaacgaaacaacgtcacatacacatgcactgcgactatgaatcatcaatgataaaatgaaa |
52446132 |
T |
|
| Q |
118 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52446131 |
caatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataa |
52446032 |
T |
|
| Q |
218 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52446031 |
taaaataatgaacatcaacacaactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacat--------gaagagtaa |
52445940 |
T |
|
| Q |
318 |
atcaaacatcaacatcatcatacgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
52445939 |
atcaaacatcaacatcatcatacgtgtcagggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaactttta |
52445840 |
T |
|
| Q |
418 |
gacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52445839 |
gacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 52447167 - 52446722
Alignment:
| Q |
18 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
117 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
52447167 |
cacaaagcaatacaacacaagcacaaagtgaatctgaaagaacaaaacaacgtaacaaacacatacattgcgattatgaatcatcaataataaaatgaaa |
52447068 |
T |
|
| Q |
118 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
217 |
Q |
| |
|
||||||| ||| |||||||| | |||| | |||| | ||||||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
52447067 |
caatctacaaa---caaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataa |
52446972 |
T |
|
| Q |
218 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
317 |
Q |
| |
|
|| || |||||||||||||||||| |||||||| ||||||| | ||||||||||||||| |||||||||||||||||| || | ||||||| |
|
|
| T |
52446971 |
tagaacaatgaacatcaacataaccatacattacgattgtggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaa |
52446880 |
T |
|
| Q |
318 |
atcaaacatcaacatcatcat----------acgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagtt |
407 |
Q |
| |
|
|||||||||||| |||||| | |||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |
|
|
| T |
52446879 |
atcaaacatcaatatcatcgtacataagtgaacgtatcaaggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacct |
52446780 |
T |
|
| Q |
408 |
aaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatat |
465 |
Q |
| |
|
|||||||||||||| || ||||||| || |||| |||||| ||| ||||||||||||| |
|
|
| T |
52446779 |
aaaacttgtagacagatatgttagtgcttaataatttgtatgaataaattaaacatat |
52446722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 514 - 663
Target Start/End: Complemental strand, 52445451 - 52445300
Alignment:
| Q |
514 |
atctccgatggaggtccttaccattgctggtggattgctccaa--gtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
611 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52445451 |
atctccgacggaggtccttaccattgctggtggattgctccaacagtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
52445352 |
T |
|
| Q |
612 |
atcatgtgtctgaaaatatcgttctcgtggacaaatttaagtatgttagaaa |
663 |
Q |
| |
|
|| ||||||| ||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
52445351 |
attatgtgtccgaagatctcgttctcgtggacaaatttaagtatgttagaaa |
52445300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 382 - 511
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
382 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
481 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
|
| Q |
482 |
gataaggtgtgtataaatatgtctttaatt |
511 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |
|
|
| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University