View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_23 (Length: 267)
Name: NF5343_low_23
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 39291605 - 39291877
Alignment:
| Q |
1 |
cttcttaaaacttccatatccaagtgtgtcaaagacgtctttttagtaagcagtcgatggttccttaacattcaaaattcaaagtaca-------aactt |
93 |
Q |
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| T |
39291605 |
cttcttaaaacttccatatccaagtgtgtcaaagacgtctttttagtaagcagtcgatggttccttaacattcaaaattcaaagtacacgaagaaaactt |
39291704 |
T |
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| Q |
94 |
gcagaagagactccaaaggaagttcgaatacattgacacccgtgcattgtatgagttagtagtttcttagtcttttctataaatagtagagtcaaactcc |
193 |
Q |
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| T |
39291705 |
gcagaagagactccaaaggaagttagaatacattgacacccgtgcattgtatgagttagtagtttcttagttttttctataaatagtagagtcaaactcc |
39291804 |
T |
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| Q |
194 |
atacaaagaagttc-----atttatgttccaaaaacttgc---ctaaataacatatccgcctcacagaataat |
258 |
Q |
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| T |
39291805 |
atacaaaaaagttcatttaatttatgttccaaaaacttgcctactaaataacatatctgcctcacagaataat |
39291877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 29456757 - 29456818
Alignment:
| Q |
166 |
ttttctataaatagtagagtcaaactccatacaaagaagttcatttatgttccaaaaacttg |
227 |
Q |
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| T |
29456757 |
ttttctataaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaacttg |
29456818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 40945507 - 40945572
Alignment:
| Q |
165 |
cttttctataaatagtagagtcaaactccatacaaagaagttcatttatgttcca-aaaacttgcc |
229 |
Q |
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| T |
40945507 |
cttttttatgaatagtagaatcaaacttcatgcaaaggagttcatttatgttccacaaaacttgcc |
40945572 |
T |
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