View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5343_low_30 (Length: 242)
Name: NF5343_low_30
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 20868188 - 20868318
Alignment:
| Q |
16 |
atgaaacgttcaattagcaaatcccatgtaattcgtatccttaagtaaatcgagttagctcataaaaaattaaaactcaaatgatgtttgccgacacaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20868188 |
atgaaacgttcaattagcaaatcccatgtaatccgtatccttaagtaaatcgagttagctcatgaaaaattaaaactcaaatgatgtttgccgacacaaa |
20868287 |
T |
|
| Q |
116 |
tgatatattcctcctttgttttcttcttttc |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
20868288 |
tgatatattcctcctttgttttcttcttttc |
20868318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 3408441 - 3408524
Alignment:
| Q |
11 |
gagagatgaaacgttcaattagcaaat-cccatgtaattcgtatccttaagtaaatcgagttagctcataaaaaattaaaactca |
94 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3408441 |
gagaaatgaaacgt-caattagcaaattcccatgtaattcgtatccttaagtaaatcgagttagctcatgaaaaattaaaactca |
3408524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 44738021 - 44738074
Alignment:
| Q |
93 |
caaatgatgtttgccgacacaaatgatatattcctcctttgttttcttcttttc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44738021 |
caaatgatgtttgccgacacaaatgatatattcctcctttgttttcttcttttc |
44738074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University