View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_31 (Length: 241)
Name: NF5343_low_31
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 45314182 - 45314404
Alignment:
| Q |
19 |
aagatgcatagatacttgagctatatccgacattgtaattgataatttgacatctgattttggatttgattcgagtatttaatccgagtgtcacccattt |
118 |
Q |
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| T |
45314182 |
aagatgcatagatacttgagctacatacggcattgtaattgataatttgacatctgattttggatttgattcgagtatttaatccgagtgtcacccattt |
45314281 |
T |
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| Q |
119 |
tcagctattgtcaattctaacattggtcgatcttattcctggaagtaaaacttcattacttgaagaagcatttaatcggaacttactcgctacatttctt |
218 |
Q |
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| T |
45314282 |
tcagctattgtcaattctaacattggccgatcttattcctggaagtaaaactacagtacttgaagaagcatttaatcggaacttactcgctacatttctt |
45314381 |
T |
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| Q |
219 |
ctggtaaacaatataatcctcgg |
241 |
Q |
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| T |
45314382 |
gtggtaaacaatataatcctcgg |
45314404 |
T |
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Back To:
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Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 27760093 - 27760303
Alignment:
| Q |
30 |
atacttgagctatatccgacattgtaattgataatttgacatctgattttggatttgattcgagtatttaatccgagtgtcacccattttcagctattgt |
129 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||| |
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| T |
27760093 |
atacttgagctatatccgacattgtaattgttaatttgacatctgattttggatttgattcgagtatttaatctgaatgtcactctttttcagctattgt |
27760192 |
T |
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| Q |
130 |
caattctaacattggtcgatcttattcctggaagtaaaacttcattacttgaagaagcatttaatcggaacttactcgctacatttcttctggtaaacaa |
229 |
Q |
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| T |
27760193 |
caattctaacactggccgatcttattcctggaagtaaaacttcagtacttgaagaagcatttaatcggaacttactcgctacatttcttctggtaaacaa |
27760292 |
T |
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| Q |
230 |
tataatcctcg |
240 |
Q |
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| T |
27760293 |
tatattcctcg |
27760303 |
T |
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