View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5343_low_35 (Length: 236)
Name: NF5343_low_35
Description: NF5343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5343_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 50759919 - 50759706
Alignment:
| Q |
16 |
ttttcttcttcatattttttatgaactcgcctgggagacattcttttattttggttgtaaagatacatttcaatttaactagaaacatagccttagaatc |
115 |
Q |
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| T |
50759919 |
ttttcttcttcatattttttatgaactcgcctgggagacattcttttattttggttgtaaagatacatttcaatttaactagaaacatagccttagaatc |
50759820 |
T |
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| Q |
116 |
aaaacttggcacttgtattttcacaagccttatttcactcgatacagtcacaaaaaatgatgcaaaaccaaataacaacaacaaaatccataatatggag |
215 |
Q |
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| T |
50759819 |
aaaacttggcacttgtattttcacaagccttatttcactcgatacagtcacaaaaaatgatgcaaaaccaaataacaacaacaaaatccataatatggag |
50759720 |
T |
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| Q |
216 |
cccattttcatctc |
229 |
Q |
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|||||||||||||| |
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| T |
50759719 |
cccattttcatctc |
50759706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 44294711 - 44294783
Alignment:
| Q |
16 |
ttttcttcttcatattttttatgaactcgcctgggagacattcttttattttggttgtaaagatacatttcaa |
88 |
Q |
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|||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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| T |
44294711 |
tttttttcttcatattttttatgaactcacttaggagacattcttttattttggttgtaaagatacatttcaa |
44294783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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